mlsanityData to 14 Oct 2026

Do Center Biases Propagate? Robustness of Pathology Foundation Models in Whole-Slide Image Classification

arXiv 2609.28231 ↗First posted 23 Sep 2026cs.CV cs.AIcited by 0

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Abstract (arXiv)

Pathology foundation models (PFMs) have transformed computational pathology through powerful representation learning from histopathological images. PFMs provide rich, discriminative representations for whole slide image (WSI) analysis, enabling tasks such as slide-level classification under multiple instance learning (MIL). However, these representations may also encode non-biological signals associated with acquisition centers, potentially introducing spurious shortcuts into downstream predictions. In this work, we evaluate center-associated robustness in WSI classification using a controlled training setting with increasing class-center correlations quantified by Cram'er's V. We benchmark six PFMs across four datasets and two MIL aggregators, while evaluating ComBat as a robustification strategy. We further introduce the Area Under the Cram'er's V Curve (AUCC) to jointly capture absolute classification performance and its degradation as spurious correlation increases. Results show that center-related information encoded by PFMs propagates to WSI-level predictions, with robustness depending on both the PFM representation and MIL aggregation strategy. Additionally, ComBat harmonization does not provide consistent robustness gains across datasets.

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References · 6

  1. 2018Attention-based Deep Multiple Instance Learningcited by 1,095
  2. 2021TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classificationcited by 555
  3. 2024Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathologycited by 161
  4. 2024Knowledge-enhanced Pretraining for Vision-language Pathology Foundation Model on Cancer Diagnosiscited by 21
  5. 2024Pathology Foundation Modelscited by 7
  6. 2025Benchmarking histopathology foundation models in a multi-center dataset for skin cancer subtypingcited by 3

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