One Model to Magnify Them All: Efficient Scale-Invariant Histopathology via Conditional Normalization and Continuous Magnification Training
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Abstract (arXiv)
Whole slide images (WSIs) in digital histopathology are acquired at discrete magnification levels encoding complementary diagnostic information from global tissue architecture to fine-grained cellular morphology. Yet, deep learning models remain sensitive to scale variation. Existing magnification-invariant methods rely on multi-scale architectures at predefined discrete resolutions, while in clinical deployment the acquisition magnification varies continuously, rarely aligns with a model's fixed training resolution, and intermediate scales are common, so robust coverage otherwise demands a costly ensemble of magnification-specific models. We propose Conditional Layer Normalization (CLN), a lightweight mechanism that generates affine normalization parameters from input pixel size via a small MLP, integrated into standard CNN architectures for both WSI classification and segmentation. Trained on patches sampled continuously across a range of pixel sizes, the model decouples inference from scanner-dependent magnification and generalizes to arbitrary, previously unseen scales at test time. On the PANDA prostate cancer dataset, our approach on average matches or exceeds independently trained single-magnification models and ranks among the top three performers at every evaluated magnification, including those unseen during training. This collapses a five-model ensemble into a single network and reduces training, and inference cost roughly 4-5 times, while leaving the multiply-accumulate count unchanged. The code is available at: https://github.com/aflorkowska/OneModelToMagnifyThemAll.
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References · 8
- 2015Deep Residual Learning for Image Recognitioncited by 51,809
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,604
- 2022Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learningcited by 357
- 2019Deep neural network models for computational histopathology: A surveycited by 165
- 2024Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathologycited by 144
- 2020Multi-scale Domain-adversarial Multiple-instance CNN for Cancer Subtype Classification with Unannotated Histopathological Imagescited by 81
- 2019Adaptive Weighting Multi-Field-of-View CNN for Semantic Segmentation in Pathologycited by 36
- 2020Pix2Pix-based Stain-to-Stain Translation: A Solution for Robust Stain Normalization in Histopathology Images Analysiscited by 23
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