MolGVR: A Chemistry-Grounded Framework for Text-to-Molecule Generation
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Abstract (arXiv)
Text-to-molecule generation is typically formulated as a one-shot sequence generation problem, where a model directly maps target descriptions to molecular representations. However, molecular descriptions often contain informative structural constraints, and violating such constraints can change the molecular identity. This makes chemical verification and error correction important but underexplored. To fill this gap, we propose MolGVR, a chemistry-grounded Generator--Verifier--Refiner framework. The Generator infers structural evidence and generates candidate molecules. The Verifier addresses the lack of chemical validation by converting descriptions into chemical constraints and checking candidates against them. The Refiner addresses generation failures by revising candidates rejected by the Verifier. Experiments on ChEBI-20 and PCDes show that MolGVR improves exact-match performance. These results suggest that coupling generation with executable verification and feedback-guided refinement is an effective way to improve text-to-molecule generation.
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References · 22
- 2017Attention Is All You Needcited by 59,932
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- 2024DeepSeekMath: Pushing the Limits of Mathematical Reasoning in Open Language Modelscited by 8,851
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- 2023MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adaptercited by 128
- 2024LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Datasetcited by 124
- 2023Empowering Molecule Discovery for Molecule-Caption Translation with Large Language Models: A ChatGPT Perspectivecited by 91
- 2023GIT-Mol: A Multi-modal Large Language Model for Molecular Science with Graph, Image, and Textcited by 82
- 2023MolXPT: Wrapping Molecules with Text for Generative Pre-trainingcited by 81
- 2023DrugAssist: A Large Language Model for Molecule Optimizationcited by 57
- 2024BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuningcited by 54
- 2025Training a Scientific Reasoning Model for Chemistrycited by 54
10 more
- 2024Text-Guided Molecule Generation with Diffusion Language Modelcited by 31
- 2024Large Language Models are In-Context Molecule Learnerscited by 18
- 2025Chem-R: Learning to Reason as a Chemistcited by 16
- 2024LDMol: A Text-to-Molecule Diffusion Model with Structurally Informative Latent Space Surpasses AR Modelscited by 11
- 2024MolReFlect: Towards In-Context Fine-grained Alignments between Molecules and Textscited by 11
- 2025MolReasoner: Toward Effective and Interpretable Reasoning for Molecular LLMscited by 11
- 2025Mol-R1: Towards Explicit Long-CoT Reasoning in Molecule Discoverycited by 11
- 2024Structural Reasoning Improves Molecular Understanding of LLMcited by 10
- 20243D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modelingcited by 9
- 2025MADD: Multi-Agent Drug Discovery Orchestracited by 4
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