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GLI-AL: A Multi-Modal Glioma MRI Label Resource with Unified Anatomy-Lesion Labels

arXiv 2607.22135 ↗First posted 24 Jul 2026cs.CVcited by 0

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Abstract (arXiv)

Existing BraTS-GLI datasets provide a widely used benchmark for adult glioma MRI segmentation, but their task definition focuses on tumor subregions and does not systematically represent coexisting white matter hyperintensities (WMH). In joint segmentation settings, such unlabeled abnormalities introduce task-specific label noise by treating pathological regions as normal tissue. To address this limitation, we introduce BraTS-GLI Anatomy-Lesion, a controlled-access, labels-only derived resource built from the BraTS 2023-GLI training cohort. The resource provides 1,251 unified eight-class anatomy-lesion label sets aligned with the original four-modal MRI cases, including image-repair labels for 116 cases requiring repaired imaging inputs. The cohort is organized into a 394-case purified subset and an 857-case extended subset, with case-level metadata covering label source, image-repair requirements, quality-control status, access conditions, checksums, and release boundaries. Compared with the original BraTS-GLI annotations, the resource substantially expands foreground supervision by incorporating healthy brain tissues and previously unlabeled coexisting abnormalities within a unified label space. A validation study using MedNeXt and T1/FLAIR inputs suggests that WMH-aware supervision preserves healthy-tissue segmentation performance across both in-domain GLI and external WMH datasets, while improving sensitivity to coexisting lesions relative to noisy-control training. The resource is intended for scientific research and supports joint anatomy-lesion supervision, label-noise analysis, and reproducible evaluation. Data are available at https://www.synapse.org/Synapse:syn75210889/wiki/, and code is available at https://github.com/xyx200/brats-gli-anatomy-lesion-code. The data resource DOI is https://doi.org/10.7303/SYN75210889.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 7 of its 21 references that are in the map. First posted on arXiv 24 Jul 2026.

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References · 7

  1. 2021The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classificationcited by 507
  2. 2021SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retrainingcited by 235
  3. 2023MedNeXt: Transformer-driven Scaling of ConvNets for Medical Image Segmentationcited by 161
  4. 2019Automated brain extraction of multi-sequence MRI using artificial neural networkscited by 133
  5. 2019Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challengecited by 115
  6. 2021MedPerf: Open Benchmarking Platform for Medical Artificial Intelligence using Federated Evaluationcited by 88
  7. 2023Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRIcited by 15

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