Transfer Learning for FHIR Questionnaire Terminology Binding
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Abstract (arXiv)
Electronic prior authorization workflows require FHIR Questionnaire items to carry LOINC codes, yet most items in the HL7 Da Vinci CDS-Library lack these bindings. We treat this as a retrieval problem: given a Questionnaire item's text, find the correct LOINC code in a pool of 97,314 active codes. We compare six methods (TF-IDF, frozen MiniLM, BioBERT, BioLORD, contrastively fine-tuned MiniLM, and a TF-IDF+GPT reranker) on a 54-item evaluation set spanning three query styles (natural question, medium, and terse). No single method wins on every metric. BioLORD, a frozen encoder pre-trained on biomedical ontology definitions, has the best top-rank accuracy (R@1 = 0.185, MRR = 0.246) despite seeing no task-specific data, while a contrastive fine-tune on raw LHC-Forms pairs takes R@5 (0.389) and R@10 (0.426). A distribution-shift ablation shows why the fine-tune in our main table is not the strongest one: adding GPT-generated paraphrases to the raw pairs drops R@5 from 0.389 to 0.296, so the augmented union underperforms raw-only training on every metric except R@1. Performance peaks at 5k training pairs. Error analysis on BioLORD's R@1 failures shows that wrong-specificity and ambiguous-text cases together account for 59% of errors.
Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 5 of its 8 references that are in the map. First posted on arXiv 13 Jun 2026.
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References · 5
- 2019Sentence-BERT: Sentence Embeddings using Siamese BERT-Networkscited by 9,170
- 2020Dense Passage Retrieval for Open-Domain Question Answeringcited by 3,824
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,947
- 2021GPL: Generative Pseudo Labeling for Unsupervised Domain Adaptation of Dense Retrievalcited by 119
- 2022BioLORD: Learning Ontological Representations from Definitions (for Biomedical Concepts and their Textual Descriptions)cited by 21
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