mlsanityData to 14 Oct 2026

All-atomistic Transferable Neural Potentials for Protein Solvation

arXiv 2605.14584 ↗First posted 14 May 2026physics.chem-ph cs.LGcited by 0

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Abstract (arXiv)

Implicit solvent models are widely used to decrease the number of solvent degrees of freedom and enable the calculation of solvation energetics without water molecules. However, its accuracy often falls short compared to explicit models. Recent advancements in neural potentials have shown promise in drug discovery, but transferability remains a persistent challenge. Here, we introduce the Protein Hydration Neural Network (PHNN), an implicit solvent model that extends analytical continuum solvation by learning transferable corrections to model parameters instead of applying post hoc adjustments to final energies. The model is explicitly designed to maximize data efficiency by leveraging physical priors embedded in the data. We demonstrate that PHNN improves accuracy relative to traditional analytical methods and maintains predictive accuracy on out-of-domain protein systems.

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References · 9

  1. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 708
  2. 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 474
  3. 2022On the Pitfalls of Heteroscedastic Uncertainty Estimation with Probabilistic Neural Networkscited by 120
  4. 2018Machine Learning of coarse-grained Molecular Dynamics Force Fieldscited by 69
  5. 2020Coarse Graining Molecular Dynamics with Graph Neural Networkscited by 56
  6. 2023OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentialscited by 47
  7. 2023Navigating protein landscapes with a machine-learned transferable coarse-grained modelcited by 23
  8. 2021Machine Learning Implicit Solvation for Molecular Dynamicscited by 17
  9. 2025Extending machine learning model for implicit solvation to free energy calculationscited by 1

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