mlsanityData to 14 Oct 2026

SpatialEpiBench: Benchmarking Spatial Information and Epidemic Priors in Forecasting

arXiv 2605.06530 ↗First posted 7 May 2026cs.AIcited by 1

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Abstract (arXiv)

Accurate epidemic forecasting is crucial for public health response, resource allocation, and outbreak intervention, but remains difficult with sparse, noisy, and highly non-stationary data. Because epidemics unfold across interacting regions, spatiotemporal methods are natural candidates for improving forecasts. Despite growing interest in spatial information, no standardized benchmark exists, and current evaluations often use simple chronological train-test splits that do not reflect real-time forecasting practice. We address this gap with SpatialEpiBench, a challenging benchmark for spatiotemporal epidemic forecasting in realistic public-health settings. SpatialEpiBench includes 11 epidemic datasets with standardized rolling evaluations and outbreak-specific metrics. We evaluate adjacency-informed forecasting models with widely used epidemic priors that adapt general models to epidemiology, but find that most methods underperform a simple last-value baseline from 1 day to 1 month ahead, even during outbreaks and with these priors. We identify three major failure modes: (1) poor outbreak anticipation, (2) difficulty handling sparsity and noise, and (3) limited utility of common geographic adjacency for epidemiological spatial information. We release benchmark data, code, and instructions at https://github.com/Rachel-Lyu/SpatialEpiBench to support development of operationally useful epidemic forecasting models.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 15 of its 47 references that are in the map. First posted on arXiv 7 May 2026.

Builds on

15 of 47 references.

References · 15

  1. 2022Are Transformers Effective for Time Series Forecasting?cited by 1,424
  2. 2018Spatial Temporal Graph Convolutional Networks for Skeleton-Based Action Recognitioncited by 1,209
  3. 2017DeepAR: Probabilistic Forecasting with Autoregressive Recurrent Networkscited by 1,013
  4. 2019Graph WaveNet for Deep Spatial-Temporal Graph Modelingcited by 829
  5. 2020Connecting the Dots: Multivariate Time Series Forecasting with Graph Neural Networkscited by 566
  6. 2020Adaptive Graph Convolutional Recurrent Network for Traffic Forecastingcited by 530
  7. 2021Spectral Temporal Graph Neural Network for Multivariate Time-series Forecastingcited by 299
  8. 2021Discrete Graph Structure Learning for Forecasting Multiple Time Seriescited by 171
  9. 2024A Review of Graph Neural Networks in Epidemic Modelingcited by 31
  10. 2022EINNs: Epidemiologically-informed Neural Networkscited by 21
  11. 2022EpiGNN: Exploring Spatial Transmission with Graph Neural Network for Regional Epidemic Forecastingcited by 17
  12. 2025TusoAI: Agentic Optimization for Scientific Methodscited by 4
3 more
  1. 2026IDOBE: Infectious Disease Outbreak forecasting Benchmark Ecosystemcited by 2
  2. 2025Combining digital data streams and epidemic networks for real time outbreak detectioncited by 1
  3. 2026Prior Knowledge-enhanced Spatio-temporal Epidemic Forecastingcited by 1

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