mlsanityData to 7 Oct 2026

SHIELD: A Diverse Clinical Note Dataset and Distilled Small Language Models for Enterprise-Scale De-identification

arXiv 2605.03301 ↗First posted 5 May 2026cs.CL cs.AIcited by 0

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Abstract (arXiv)

De-identification of clinical text is a prerequisite for the secondary use of electronic health records. Existing public benchmarks such as the i2b2 2006 and 2014 corpora are over a decade old and lack the semantic and demographic diversity of modern clinical narratives. Large Language Models (LLMs) reach state-of-the-art zero-shot extraction, but their use at enterprise scale is limited by computational cost and by hospital data governance that restricts sending Protected Health Information (PHI) to cloud APIs. We introduce SHIELD (Synthetic Human-annotated Identifier-replaced Entries for Learning and De-identification), a diverse clinical note dataset of 1,381 notes with 10,229 gold-standard PHI spans across 9 categories, built with set-cover diversity sampling across demographic and document-type strata and human-in-the-loop adjudication. We evaluate four LLMs (two proprietary, two open-weight) to establish a performance ceiling on SHIELD, then show that a teacher-student distillation framework transfers these capabilities into locally deployable Small Language Models. Our best distilled model reaches micro-averaged span-level precision of 0.89 and recall of 0.88 while running on standard workstation hardware. It trails its cloud teacher on per-category recall (0.90 vs. 0.81 macro-averaged) but remains competitive given its lower cost and on-premise deployability. Cross-dataset evaluation shows that diversity-trained models generalize well on universal structured PHI categories, while institution-specific entities remain hard to transfer in both directions, which suggests pairing broad-coverage models with specialized models for high-volume, semi-structured note types. We publicly release the SHIELD dataset and the distilled DeBERTa v3 model to provide an accurate, cost-effective de-identification pipeline deployable entirely behind institutional firewalls.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 18 of its 43 references that are in the map. First posted on arXiv 5 May 2026.

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18 of 43 references.

References · 18

  1. 2021DeBERTaV3: Improving DeBERTa using ELECTRA-Style Pre-Training with Gradient-Disentangled Embedding Sharingcited by 1,219
  2. 2025Small Language Models are the Future of Agentic AIcited by 254
  3. 2023MedCPT: Contrastive Pre-trained Transformers with Large-scale PubMed Search Logs for Zero-shot Biomedical Information Retrievalcited by 182
  4. 2019Effectively Unbiased FID and Inception Score and where to find themcited by 161
  5. 2023DeID-GPT: Zero-shot Medical Text De-Identification by GPT-4cited by 128
  6. 2025BioClinical ModernBERT: A State-of-the-Art Long-Context Encoder for Biomedical and Clinical NLPcited by 26
  7. 2026The Llama 4 Herd: Architecture, Training, Evaluation, and Deployment Notescited by 25
  8. 2020A new paradigm for accelerating clinical data science at Stanford Medicinecited by 16
  9. 2023De-identification of clinical free text using natural language processing: A systematic review of current approachescited by 13
  10. 2025ModernBERT or DeBERTaV3? Examining Architecture and Data Influence on Transformer Encoder Models Performancecited by 11
  11. 2025A Pragmatic Note on Evaluating Generative Models with Fr'echet Inception Distance for Retinal Image Synthesiscited by 8
  12. 2025Exploiting Vocabulary Frequency Imbalance in Language Model Pre-trainingcited by 7
6 more
  1. 2024Fr'echet Distance for Offline Evaluation of Information Retrieval Systems with Sparse Labelscited by 5
  2. 2023Validating transformers for redaction of text from electronic health records in real-world healthcarecited by 4
  3. 2025RedactOR: An LLM-Powered Framework for Automatic Clinical Data De-Identificationcited by 4
  4. 2023Beyond Accuracy: Automated De-Identification of Large Real-World Clinical Text Datasetscited by 3
  5. 2025Jensen-Shannon Divergence Message-Passing for Rich-Text Graph Representation Learningcited by 2
  6. 2025Improving the Performance of Radiology Report De-identification with Large-Scale Training and Benchmarking Against Cloud Vendor Methodscited by 1

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