Is SAM3 ready for pathology segmentation?
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Abstract (arXiv)
Is Segment Anything Model 3 (SAM3) capable in segmenting Any Pathology Images? Digital pathology segmentation spans tissue-level and nuclei-level scales, where traditional methods often suffer from high annotation costs and poor generalization. SAM3 introduces Promptable Concept Segmentation, offering a potential automated interface via text prompts. With this work, we propose a systematic evaluation protocol to explore the capability space of SAM3 in a structured manner. Specifically, we evaluate SAM3 under different supervision settings including zero-shot, few-shot, and supervised with varying prompting strategies. Our extensive evaluation on pathological datasets including NuInsSeg, PanNuke and GlaS, reveals that: (1) text-only prompts poorly activate nuclear concepts; (2) performance is highly sensitive to visual prompt types and budgets; (3) few-shot learning offers gains, but SAM3 lacks robustness against visual prompt noise; and (4) a significant gap persists between prompt-based usage and task-trained adapter-based reference. Our study delineates SAM3's boundaries in pathology image segmentation and provides practical guidance on the necessity of pathology domain adaptation.
Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 12 of its 15 references that are in the map. First posted on arXiv 20 Apr 2026.
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12 of 15 references.
References · 12
- 2023Segment Anythingcited by 8,234
- 2024SAM 2: Segment Anything in Images and Videoscited by 2,863
- 2025SAM 3: Segment Anything with Conceptscited by 906
- 2023Segment Anything in Medical Imagescited by 227
- 2016Gland Segmentation in Colon Histology Images: The GlaS Challenge Contestcited by 203
- 2023Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imagingcited by 161
- 2022Self-Support Few-Shot Semantic Segmentationcited by 96
- 2024Open-Vocabulary SAM: Segment and Recognize Twenty-thousand Classes Interactivelycited by 75
- 2023NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Imagescited by 29
- 2022Online Easy Example Mining for Weakly-supervised Gland Segmentation from Histology Imagescited by 15
- 2025SAM3-Adapter: Efficient Adaptation of Segment Anything 3 for Camouflage Object Segmentation, Shadow Detection, and Medical Image Segmentationcited by 7
- 2024Few-Shot Learning for Annotation-Efficient Nucleus Instance Segmentationcited by 3
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