Contraction and Hourglass Persistence for Learning on Graphs, Simplices, and Cells
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Abstract (arXiv)
Persistent homology (PH) encodes global information, such as cycles, and is thus increasingly integrated into graph neural networks (GNNs). PH methods in GNNs typically traverse an increasing sequence of subgraphs. In this work, we first expose limitations of this inclusion procedure. To remedy these shortcomings, we analyze contractions as a principled topological operation, in particular, for graph representation learning. We study the persistence of contraction sequences, which we call Contraction Homology (CH). We establish that forward PH and CH differ in expressivity. We then introduce Hourglass Persistence, a class of topological descriptors that interleave a sequence of inclusions and contractions to boost expressivity, learnability, and stability. We also study related families parametrized by two paradigms. We also discuss how our framework extends to simplicial and cellular networks. We further design efficient algorithms that are pluggable into end-to-end differentiable GNN pipelines, enabling consistent empirical improvements over many PH methods across standard real-world graph datasets. Code is available at hrefhttps://github.com/Aalto-QuML/Hourglassthis https URL.
Key facts. No citing papers in the map yet (data through 13 Oct 2026). Builds on 32 of its 64 references that are in the map. First posted on arXiv 19 Apr 2026.
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References · 32
- 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,318
- 2018How Powerful are Graph Neural Networks?cited by 4,373
- 2020Open Graph Benchmark: Datasets for Machine Learning on Graphscited by 2,157
- 2017Deep Setscited by 1,404
- 2018Weisfeiler and Leman Go Neural: Higher-order Graph Neural Networkscited by 878
- 2020TUDataset: A collection of benchmark datasets for learning with graphscited by 723
- 2020Benchmarking Graph Neural Networkscited by 675
- 2022Equivariant Diffusion for Molecule Generation in 3Dcited by 672
- 2022GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generationcited by 514
- 2020Can Graph Neural Networks Count Substructures?cited by 235
- 2020Generalization and Representational Limits of Graph Neural Networkscited by 217
- 2023Geometric Latent Diffusion Models for 3D Molecule Generationcited by 185
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- 2015A roadmap for the computation of persistent homologycited by 126
- 2019PersLay: A Neural Network Layer for Persistence Diagrams and New Graph Topological Signaturescited by 125
- 2021Topological Graph Neural Networkscited by 86
- 2019Graph Filtration Learningcited by 68
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 65
- 2019Learning metrics for persistence-based summaries and applications for graph classificationcited by 57
- 2023The Expressive Power of Graph Neural Networks: A Surveycited by 27
- 2023Going beyond persistent homology using persistent homologycited by 21
- 2020Counting Substructures with Higher-Order Graph Neural Networks: Possibility and Impossibility Resultscited by 19
- 2023On the Expressivity of Persistent Homology in Graph Learningcited by 18
- 2022Neural Approximation of Graph Topological Featurescited by 16
- 2024Boosting Graph Pooling with Persistent Homologycited by 9
- 2025Enhancing Graph Representation Learning with Localized Topological Featurescited by 6
- 2025Geometry-Aware Edge Pooling for Graph Neural Networkscited by 5
- 2016An Efficient Representation for Filtrations of Simplicial Complexescited by 3
- 2025On topological descriptors for graph productscited by 2
- 2014Approximating Persistent Homology in Euclidean Space Through Collapsescited by 1
- 2018Filtration Simplification for Persistent Homology via Edge Contractioncited by 1
- 2023Strong Collapse of Random Simplicial Complexescited by 1
- 2025Graph Persistence goes Spectralcited by 1
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