ChemGraph-XANES: An Agentic Framework for XANES Simulation and Curation
On the map: LLM agents and tool use → Medical and scientific domain agents
Abstract (arXiv)
Computational X-ray absorption near-edge structure (XANES) is widely used to interpret local coordination environments, oxidation states, and electronic structure, but large computational campaigns are often limited by workflow complexity. We present ChemGraph-XANES, a large language model (LLM)-based agentic framework that combines documentation-grounded parameter retrieval via retrieval-augmented generation (RAG), schema-constrained tool execution, deterministic FDMNES input generation, Parsl-backed execution, and provenance-aware data curation. Scripted and natural-language interfaces share a common scientific backend for structure handling, parameterization, execution, spectral extraction, and optional post-processing. We evaluate three workflow modes: documentation-grounded parameter propagation, structure-file-based execution, and composition-based execution from a chemistry-level request. Repeated trials yielded end-to-end completion in 10/10 composition-based runs, 10/10 structure-file-based runs, and 9/10 documentation-grounded RAG runs. In every RAG run, the energy-grid specification retrieved from the FDMNES manual was correctly propagated, with the single end-to-end failure occurring downstream during multi-structure handling. In a separate task-parallel demonstration, the framework retrieved 21 TiO2 structures from the Materials Project and submitted one FDMNES calculation per structure. All calculations completed successfully, with Parsl distributing the independent tasks across the user-configured worker pool. Together, these results show that ChemGraph-XANES provides a constrained and reproducible orchestration layer for computational spectroscopy, supporting consistent execution of representative tasks, documentation-linked parameter selection, and task-parallel generation of structure-linked XANES collections.
Key facts. Cited by 1 paper in the map (data through 7 Oct 2026). Placed in Medical and scientific domain agents, one of 16 directions in LLM agents and tool use. Builds on 13 of its 49 references that are in the map. First posted on arXiv 17 Apr 2026.
Builds on
13 of 49 references.
Closest ancestors · 4
Same direction, newest first
- 2025From What to Why: A Multi-Agent System for Evidence-based Chemical Reaction Condition Reasoning28 Sep
- 2025DREAMS: Density Functional Theory Based Research Engine for Agentic Materials Simulation18 Jul
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- 2024CACTUS: Chemistry Agent Connecting Tool-Usage to Science2 May
Other references · 9
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- 2019Parsl: Pervasive Parallel Programming in Pythoncited by 36
- 2023Monte Carlo Thought Search: Large Language Model Querying for Complex Scientific Reasoning in Catalyst Designcited by 16
- 2018Machine Learning Enabled Computational Screening of Inorganic Solid Electrolytes for Dendrite Suppression with Li Metal Anodecited by 10
- 2026XANE(3): An E(3)-Equivariant Graph Neural Network for Accurate Prediction of XANES Spectra from Atomic Structurescited by 1
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Citing papers per year: 2026: 1.
1 paper.
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