Evaluating quality in synthetic data generation for large tabular health datasets
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Abstract (arXiv)
There is no consensus in the field of synthetic data on concise metrics for quality evaluations or benchmarks on large health datasets, such as historical epidemiological data. This study presents an evaluation of seven recent models from major machine learning families. The models were evaluated using four different datasets, each with a distinct scale. To ensure a fair comparison, we systematically tuned the hyperparameters of each model for each dataset. We propose a methodology for evaluating the fidelity of synthesized joint distributions, aligning metrics with visualization on a single plot. This method is applicable to any dataset and is complemented by a domain-specific analysis of the German Cancer Registries' epidemiological dataset. The analysis reveals the challenges models face in strictly adhering to the medical domain. We hope this approach will serve as a foundational framework for guiding the selection of synthesizers and remain accessible to all stakeholders involved in releasing synthetic datasets.
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References · 16
- 2019Optuna: A Next-generation Hyperparameter Optimization Frameworkcited by 2,501
- 2019Modeling Tabular data using Conditional GANcited by 699
- 2022TabDDPM: Modelling Tabular Data with Diffusion Modelscited by 377
- 2022Language Models are Realistic Tabular Data Generatorscited by 294
- 2017Generating Multi-label Discrete Patient Records using Generative Adversarial Networkscited by 197
- 2018Data Synthesis based on Generative Adversarial Networkscited by 185
- 2021CTAB-GAN: Effective Table Data Synthesizingcited by 156
- 2023Synthcity: facilitating innovative use cases of synthetic data in different data modalitiescited by 76
- 2019Graphical-model based estimation and inference for differential privacycited by 74
- 2022CTAB-GAN+: Enhancing Tabular Data Synthesiscited by 70
- 2022A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Modelscited by 43
- 2022TabSynDex: A Universal Metric for Robust Evaluation of Synthetic Tabular Datacited by 27
4 more
- 2024SynthEval: A Framework for Detailed Utility and Privacy Evaluation of Tabular Synthetic Datacited by 27
- 2024Systematic Assessment of Tabular Data Synthesiscited by 18
- 2024Can I trust my fake data -- A comprehensive quality assessment framework for synthetic tabular data in healthcarecited by 17
- 2023Generating tabular datasets under differential privacycited by 6
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