Improving Automatic Summarization of Radiology Reports through Mid-Training of Large Language Models
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Abstract (arXiv)
Automatic summarization of radiology reports is an essential application to reduce the burden on physicians. Previous studies have widely used the "pre-training, fine-tuning" strategy to adapt large language models (LLMs) for summarization. This study proposed a subdomain adaptation through a mid-training method to improve summarization. We explored three adaptation strategies: (1) general-domain pre-training, (2) clinical-domain pre-training, and (3) clinical-domain pre-training followed by subdomain mid-training. We developed models using large-scale clinical text from the University of Florida (UF) Health and conducted mid-training and fine-tuning experiments using widely used benchmark datasets including OpenI and MIMIC-CXR. The experimental results show that the mid-trained model, GatorTronT5-Radio, achieved the best performance, outperforming models without mid-training in both text-based measures (ROUGE-L) and factuality measures (RadGraph-F1). Our mid-training methods also demonstrate better few-shot learning and could alleviate the "cold start" problem reported in previous studies as a learning barrier. Our findings support the use of "pre-training, mid-training, fine-tuning," instead of the widely used direct fine-tuning strategy.
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References · 11
- 2019Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformercited by 14,599
- 2019BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehensioncited by 5,893
- 2019BERTScore: Evaluating Text Generation with BERTcited by 5,512
- 2019BioBERT: a pre-trained biomedical language representation model for biomedical text miningcited by 1,947
- 2021Recent Advances in Natural Language Processing via Large Pre-Trained Language Models: A Surveycited by 463
- 2021RadGraph: Extracting Clinical Entities and Relations from Radiology Reportscited by 319
- 2022GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Recordscited by 238
- 2021SciFive: a text-to-text transformer model for biomedical literaturecited by 99
- 2023Scaling laws for language encoding models in fMRIcited by 68
- 2023Model Tuning or Prompt Tuning? A Study of Large Language Models for Clinical Concept and Relation Extractioncited by 32
- 2025Mid-Training of Large Language Models: A Surveycited by 21
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