mlsanityData to 14 Oct 2026

Can Graphs Improve Tabular Foundation Models?

arXiv 2512.12405 ↗First posted 13 Dec 2025cs.LGcited by 0

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Abstract (arXiv)

Tabular data are central to many real-world systems. While recent tabular transformers and in-context learners such as SAINT, TP-BERTa, TabPFN, TabICL, and MITRA incorporate limited inter-row reasoning, most approaches still lack an explicit mechanism to model relationships among instances, even though similar samples often share related outcomes. We investigate whether introducing simple graph priors can enhance pretrained tabular transformers. Concretely, we introduce BOLERO, a lightweight, static bipartite graph head that augments RoBERTa-Tab (a RoBERTa-style tabular backbone pretrained with masked-token prediction.) Each instance connects to feature/value anchors; a small GNN refines row representations, while the backbone remains frozen. We evaluate on 80 classification and 64 regression datasets from the TP-BERTa benchmark suites, comparing against strong baselines including XGBoost, CatBoost, TabPFN-v2, MITRA, TabICL, TP-BERTa, and RoBERTa-Tab. To ensure statistically sound conclusions, we follow best practices for multi-dataset evaluation: pairwise Wilcoxon signed-rank tests on per-dataset score differences and effect sizes (median improvement with confidence intervals), rather than mean-rank post-hoc tests that depend on the competitor pool. BOLERO achieves the highest number of statistically significant wins across both classification and regression, demonstrating that lightweight graph priors meaningfully improve pretrained tabular transformers.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 14 of its 17 references that are in the map. First posted on arXiv 13 Dec 2025.

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References · 14

  1. 2017Graph Attention Networkscited by 8,923
  2. 2016XGBoost: A Scalable Tree Boosting Systemcited by 5,166
  3. 2021Revisiting Deep Learning Models for Tabular Datacited by 740
  4. 2020A Generalization of Transformer Networks to Graphscited by 661
  5. 2019Graph Transformer Networkscited by 523
  6. 2020Masked Label Prediction: Unified Message Passing Model for Semi-Supervised Classificationcited by 506
  7. 2020AutoGluon-Tabular: Robust and Accurate AutoML for Structured Datacited by 383
  8. 2021SAINT: Improved Neural Networks for Tabular Data via Row Attention and Contrastive Pre-Trainingcited by 319
  9. 2020On the Stability of Fine-tuning BERT: Misconceptions, Explanations, and Strong Baselinescited by 255
  10. 2015Should we really use post-hoc tests based on mean-ranks?cited by 116
  11. 2025Mitra: Mixed Synthetic Priors for Enhancing Tabular Foundation Modelscited by 77
  12. 2021BertGCN: Transductive Text Classification by Combining GCN and BERTcited by 74
2 more
  1. 2024Making Pre-trained Language Models Great on Tabular Predictioncited by 57
  2. 2021TabGNN: Multiplex Graph Neural Network for Tabular Data Predictioncited by 26

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