Toward Valid Generative Clinical Trial Data with Survival Endpoints
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Abstract (arXiv)
Clinical trials face mounting challenges: fragmented patient populations, slow enrollment, and unsustainable costs, particularly for late phase trials in oncology and rare diseases. While external control arms built from real-world data have been explored, a promising alternative is the generation of synthetic control arms using generative AI. A central challenge is the generation of time-to-event outcomes, which constitute primary endpoints in oncology and rare disease trials, but are difficult to model under censoring and small sample sizes. Existing generative approaches, largely GAN-based, are data-hungry, unstable, and rely on strong assumptions such as independent censoring. We introduce a variational autoencoder (VAE) that jointly generates mixed-type covariates and survival outcomes within a unified latent variable framework, without assuming independent censoring. Across synthetic and real trial datasets, we evaluate our model in two realistic scenarios: (i) data sharing under privacy constraints, where synthetic controls substitute for original data, and (ii) control-arm augmentation, where synthetic patients mitigate imbalances between treated and control groups. Our method outperforms GAN baselines on fidelity, utility, and privacy metrics, while revealing systematic miscalibration of type I error and power. We propose a post-generation selection procedure that improves calibration, highlighting both progress and open challenges for generative survival modeling.
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References · 10
- 2019Optuna: A Next-generation Hyperparameter Optimization Frameworkcited by 2,501
- 2019Modeling Tabular data using Conditional GANcited by 699
- 2021Opacus: User-Friendly Differential Privacy Library in PyTorchcited by 383
- 2021CTAB-GAN: Effective Table Data Synthesizingcited by 156
- 2018Handling Incomplete Heterogeneous Data using VAEscited by 149
- 2023Synthcity: facilitating innovative use cases of synthetic data in different data modalitiescited by 76
- 2019Continuous and Discrete-Time Survival Prediction with Neural Networkscited by 70
- 2023SurvivalGAN: Generating Time-to-Event Data for Survival Analysiscited by 17
- 2018Learning Latent Superstructures in Variational Autoencoders for Deep Multidimensional Clusteringcited by 14
- 2025Synthetic Data Privacy Metricscited by 8
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