Decoding the Configuration of AI Coding Agents: Insights from Claude Code Projects
On the map: LLM agents and tool use → Software engineering coding agents
Abstract (arXiv)
Agentic code assistants are a new generation of AI systems capable of performing end-to-end software engineering tasks. While these systems promise unprecedented productivity gains, their behavior and effectiveness depend heavily on configuration files that define architectural constraints, coding practices, and tool usage policies. However, little is known about the structure and content of these configuration artifacts. This paper presents an empirical study of the configuration ecosystem of Claude Code, one of the most widely used agentic coding systems. We collected and analyzed 328 configuration files from public Claude Code projects to identify (i) the software engineering concerns and practices they specify and (ii) how these concerns co-occur within individual files. The results highlight the importance of defining a wide range of concerns and practices in agent configuration files, with particular emphasis on specifying the architecture the agent should follow.
Key facts. Cited by 13 papers in the map (data through 7 Oct 2026). Placed in Software engineering coding agents, one of 16 directions in LLM agents and tool use. Builds on 6 of its 13 references that are in the map. First posted on arXiv 12 Nov 2025.
Builds on
6 of 13 references.
Closest ancestors · 2
Same direction, newest first
- 2025On the Use of Agentic Coding: An Empirical Study of Pull Requests on GitHub18 Sep
- 2024Motivations, Challenges, Best Practices, and Benefits for Bots and Conversational Agents in Software Engineering: A Multivocal Literature Review18 Sep
Other references · 4
- 2023SWE-bench: Can Language Models Resolve Real-World GitHub Issues?cited by 3,193
- 2022GitHub Copilot AI pair programmer: Asset or Liability?cited by 150
- 2018What's in a GitHub Star? Understanding Repository Starring Practices in a Social Coding Platformcited by 25
- 2024Unveiling ChatGPT's Usage in Open Source Projects: A Mining-based Studycited by 16
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Citing papers per year: 2026: 13.
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- 2026Harness Engineering for Agentic AI Coding Tools: An Exploratory Studycited by 10
- 2026Codified Context: Infrastructure for AI Agents in a Complex Codebasecited by 5
- 2026On the Challenges and Opportunities of Learned Sparse Retrieval for Codecited by 2
- 2026Configuration Smells in AGENTS.md Files: Common Mistakes in Configuring Coding Agentscited by 1
- 2026Deep Agentic Search for Repository-Level Code Question Answering: An Empirical Studycited by 1
- 2026ABTest: Behavior-Driven Testing for AI Coding Agentscited by 0
- 2026Documentation-Guided Agentic Codebase Migration from C to Rustcited by 0
- 2026Can Open-Source LLM Agents Replace Static Application Security Testing Tools? An Empirical Assessmentcited by 0
- 2026Toward Instructions-as-Code: Understanding the Impact of Instruction Files on Agentic Pull Requestscited by 0
- 2026Understanding the Architecture of Coding Agents: An Exploratory Study Using a Research Prototypecited by 0
- 2026PrimeAgentOrchestrator: Memory-Primed Agent Spawning for Personal AI Infrastructurecited by 0
- 2026Legacy System Modernization with Coding Agents: A Case Studycited by 0
1 more
- 2026A Study of the Reliability of Agentic AI-Generated Programs16 Sep 2026
- 2026Legacy System Modernization with Coding Agents: A Case Study29 Aug 2026
- 2026Understanding the Architecture of Coding Agents: An Exploratory Study Using a Research Prototype11 Aug 2026
- 2026Deep Agentic Search for Repository-Level Code Question Answering: An Empirical Study2 Aug 2026
- 2026Configuration Smells in AGENTS.md Files: Common Mistakes in Configuring Coding Agents14 Jun 2026
- 2026Toward Instructions-as-Code: Understanding the Impact of Instruction Files on Agentic Pull Requests11 Jun 2026
- 2026Can Open-Source LLM Agents Replace Static Application Security Testing Tools? An Empirical Assessment10 Jun 2026
- 2026Documentation-Guided Agentic Codebase Migration from C to Rust14 May 2026
- 2026PrimeAgentOrchestrator: Memory-Primed Agent Spawning for Personal AI Infrastructure8 May 2026
- 2026ABTest: Behavior-Driven Testing for AI Coding Agents3 Apr 2026
- 2026On the Challenges and Opportunities of Learned Sparse Retrieval for Code23 Mar 2026
- 2026Codified Context: Infrastructure for AI Agents in a Complex Codebase24 Feb 2026
1 more
- 2026Harness Engineering for Agentic AI Coding Tools: An Exploratory Studycited by 10
- 2026Codified Context: Infrastructure for AI Agents in a Complex Codebasecited by 5
- 2026Configuration Smells in AGENTS.md Files: Common Mistakes in Configuring Coding Agentscited by 1
- 2026Deep Agentic Search for Repository-Level Code Question Answering: An Empirical Studycited by 1
- 2026ABTest: Behavior-Driven Testing for AI Coding Agentscited by 0
- 2026Documentation-Guided Agentic Codebase Migration from C to Rustcited by 0
- 2026Can Open-Source LLM Agents Replace Static Application Security Testing Tools? An Empirical Assessmentcited by 0
- 2026Toward Instructions-as-Code: Understanding the Impact of Instruction Files on Agentic Pull Requestscited by 0
- 2026Understanding the Architecture of Coding Agents: An Exploratory Study Using a Research Prototypecited by 0
- 2026PrimeAgentOrchestrator: Memory-Primed Agent Spawning for Personal AI Infrastructurecited by 0
- 2026Legacy System Modernization with Coding Agents: A Case Studycited by 0
- 2026A Study of the Reliability of Agentic AI-Generated Programscited by 0
- 2026A Study of the Reliability of Agentic AI-Generated Programs16 Sep 2026
- 2026Legacy System Modernization with Coding Agents: A Case Study29 Aug 2026
- 2026Understanding the Architecture of Coding Agents: An Exploratory Study Using a Research Prototype11 Aug 2026
- 2026Deep Agentic Search for Repository-Level Code Question Answering: An Empirical Study2 Aug 2026
- 2026Configuration Smells in AGENTS.md Files: Common Mistakes in Configuring Coding Agents14 Jun 2026
- 2026Toward Instructions-as-Code: Understanding the Impact of Instruction Files on Agentic Pull Requests11 Jun 2026
- 2026Can Open-Source LLM Agents Replace Static Application Security Testing Tools? An Empirical Assessment10 Jun 2026
- 2026Documentation-Guided Agentic Codebase Migration from C to Rust14 May 2026
- 2026PrimeAgentOrchestrator: Memory-Primed Agent Spawning for Personal AI Infrastructure8 May 2026
- 2026ABTest: Behavior-Driven Testing for AI Coding Agents3 Apr 2026
- 2026Codified Context: Infrastructure for AI Agents in a Complex Codebase24 Feb 2026
- 2026Harness Engineering for Agentic AI Coding Tools: An Exploratory Study16 Feb 2026
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