mlsanityData to 14 Oct 2026

Towards A Transferable Acceleration Method for Density Functional Theory

arXiv 2509.25724 ↗First posted 30 Sep 2025physics.chem-ph cs.AI cs.LGcited by 3

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Abstract (arXiv)

Recently, sophisticated deep learning-based approaches have been developed for generating efficient initial guesses to accelerate the convergence of density functional theory (DFT) calculations. While the actual initial guesses are often density matrices (DM), quantities that can convert into density matrices also qualify as alternative forms of initial guesses. Hence, existing works mostly rely on the prediction of the Hamiltonian matrix for obtaining high-quality initial guesses. However, the Hamiltonian matrix is both numerically difficult to predict and intrinsically non-transferable, hindering the application of such models in real scenarios. In light of this, we propose a method that constructs DFT initial guesses by predicting the electron density in a compact auxiliary basis representation using E(3)-equivariant neural networks. Trained exclusively on small molecules with up to 20 atoms, our model achieves an average 33.3% reduction in SCF iterations for molecules three times larger (up to 60 atoms). This result is particularly significant given that baseline Hamiltonian-based methods fail to generalize, often increasing the iteration count by over 80% or failing to converge entirely on these larger systems. Furthermore, we demonstrate that this acceleration is robustly scalable: the model successfully accelerates calculations for systems with up to 900 atoms (polymers and polypeptides) without retraining. To the best of our knowledge, this work represents the first and robust candidate for a universally transferable DFT acceleration method. We also released the SCFbench dataset and its accompanying code to facilitate future research in this promising direction.

Key facts. Cited by 3 papers in the map (data through 14 Oct 2026). Builds on 21 of its 55 references that are in the map. First posted on arXiv 30 Sep 2025.

Builds on

21 of 55 references.

References · 21

  1. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 708
  2. 2018On the Generalization of Equivariance and Convolution in Neural Networks to the Action of Compact Groupscited by 300
  3. 2022e3nn: Euclidean Neural Networkscited by 174
  4. 2023Reducing SO(3) Convolutions to SO(2) for Efficient Equivariant GNNscited by 117
  5. 2019Unifying machine learning and quantum chemistry -- a deep neural network for molecular wavefunctionscited by 73
  6. 2016By-passing the Kohn-Sham equations with machine learningcited by 67
  7. 2021SE(3)-equivariant prediction of molecular wavefunctions and electronic densitiescited by 67
  8. 2023Efficient and Equivariant Graph Networks for Predicting Quantum Hamiltoniancited by 39
  9. 2023QH9: A Quantum Hamiltonian Prediction Benchmark for QM9 Moleculescited by 26
  10. 2021Equivariant graph neural networks for fast electron density estimation of molecules, liquids, and solidscited by 25
  11. 2025An Efficient Sparse Kernel Generator for O(3)-Equivariant Deep Networkscited by 22
  12. 2025Enhancing the Scalability and Applicability of Kohn-Sham Hamiltonians for Molecular Systemscited by 14
9 more
  1. 2024Self-Consistency Training for Density-Functional-Theory Hamiltonian Predictioncited by 12
  2. 2025Efficient and Scalable Density Functional Theory Hamiltonian Prediction through Adaptive Sparsitycited by 11
  3. 2025High-order Equivariant Flow Matching for Density Functional Theory Hamiltonian Predictioncited by 11
  4. 2025ELECTRA: A Cartesian Network for 3D Charge Density Prediction with Floating Orbitalscited by 10
  5. 2024A Recipe for Charge Density Predictioncited by 9
  6. 2024Image Super-resolution Inspired Electron Density Predictioncited by 8
  7. 2020Accelerating Finite-temperature Kohn-Sham Density Functional Theory with Deep Neural Networkscited by 7
  8. 2024Data-Driven Parametrization of Molecular Mechanics Force Fields for Expansive Chemical Space Coveragecited by 3
  9. 2023Machine learning for accuracy in density functional approximationscited by 2

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3 papers.