Evaluating Foundation Models with Pathological Concept Learning for Kidney Cancer
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Abstract (arXiv)
To evaluate the translational capabilities of foundation models, we develop a pathological concept learning approach focused on kidney cancer. By leveraging TNM staging guidelines and pathology reports, we build comprehensive pathological concepts for kidney cancer. Then, we extract deep features from whole slide images using foundation models, construct pathological graphs to capture spatial correlations, and trained graph neural networks to identify these concepts. Finally, we demonstrate the effectiveness of this approach in kidney cancer survival analysis, highlighting its explainability and fairness in identifying low- and high-risk patients. The source code has been released by https://github.com/shangqigao/RadioPath.
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References · 4
- 2018Attention-based Deep Multiple Instance Learningcited by 1,095
- 2020Concept Bottleneck Modelscited by 1,032
- 2022Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learningcited by 359
- 2024Evidential Concept Embedding Models: Towards Reliable Concept Explanations for Skin Disease Diagnosiscited by 7
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