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On-the-Fly Fine-Tuning of Foundational Neural Network Potentials: A Bayesian Neural Network Approach

arXiv 2507.13805 ↗First posted 18 Jul 2025cs.LG cond-mat.mtrl-sci physics.comp-phcited by 0

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Abstract (arXiv)

Due to the computational complexity of evaluating interatomic forces from first principles, the creation of interatomic machine learning force fields has become a highly active field of research. However, the generation of training datasets of sufficient size and sample diversity itself comes with a computational burden that can make this approach impractical for modeling rare events or systems with a large configuration space. Fine-tuning foundation models that have been pre-trained on large-scale material or molecular databases offers a promising opportunity to reduce the amount of training data necessary to reach a desired level of accuracy. However, even if this approach requires less training data overall, creating a suitable training dataset can still be a very challenging problem, especially for systems with rare events and for end-users who don't have an extensive background in machine learning. In on-the-fly learning, the creation of a training dataset can be largely automated by using model uncertainty during the simulation to decide if the model is accurate enough or if a structure should be recalculated with classical methods and used to update the model. A key challenge for applying this form of active learning to the fine-tuning of foundation models is how to assess the uncertainty of those models during the fine-tuning process, even though most foundation models lack any form of uncertainty quantification. In this paper, we overcome this challenge by introducing a fine-tuning approach based on Bayesian neural network methods and a subsequent on-the-fly workflow that automatically fine-tunes the model while maintaining a pre-specified accuracy and can detect rare events such as transition states and sample them at an increased rate relative to their occurrence.

Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 21 of its 67 references that are in the map. First posted on arXiv 18 Jul 2025.

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21 of 67 references.

References · 21

  1. 2015Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learningcited by 4,448
  2. 2021E(3)-Equivariant Graph Neural Networks for Data-Efficient and Accurate Interatomic Potentialscited by 708
  3. 2019A Simple Baseline for Bayesian Uncertainty in Deep Learningcited by 560
  4. 2022MACE: Higher Order Equivariant Message Passing Neural Networks for Fast and Accurate Force Fieldscited by 474
  5. 2014Stochastic Gradient Hamiltonian Monte Carlocited by 343
  6. 2021GemNet: Universal Directional Graph Neural Networks for Moleculescited by 343
  7. 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 256
  8. 2020The Open Catalyst 2020 (OC20) Dataset and Community Challengescited by 246
  9. 2023EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representationscited by 204
  10. 2015A Complete Recipe for Stochastic Gradient MCMCcited by 146
  11. 2021SpookyNet: Learning Force Fields with Electronic Degrees of Freedom and Nonlocal Effectscited by 104
  12. 2022SPICE, A Dataset of Drug-like Molecules and Peptides for Training Machine Learning Potentialscited by 82
9 more
  1. 2019Quality of Uncertainty Quantification for Bayesian Neural Network Inferencecited by 59
  2. 2022Pre-Train Your Loss: Easy Bayesian Transfer Learning with Informative Priorscited by 43
  3. 2021Informing Geometric Deep Learning with Electronic Interactions to Accelerate Quantum Chemistrycited by 30
  4. 2023Evaluation of the MACE Force Field Architecture: from Medicinal Chemistry to Materials Sciencecited by 25
  5. 2022Transfer learning for chemically accurate interatomic neural network potentialscited by 11
  6. 2018Molecular Dynamics with Neural-Network Potentialscited by 5
  7. 2023Transfer learning for atomistic simulations using GNNs and kernel mean embeddingscited by 4
  8. 2023High Accuracy Uncertainty-Aware Interatomic Force Modeling with Equivariant Bayesian Neural Networkscited by 2
  9. 2024Functional Stochastic Gradient MCMC for Bayesian Neural Networkscited by 2

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