MindGrab for BrainChop: Fast and Accurate Skull Stripping for Command Line and Browser
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Abstract (arXiv)
Deployment complexity and specialized hardware requirements hinder the adoption of deep learning models in neuroimaging. We present MindGrab, a lightweight, fully convolutional model for volumetric skull stripping across all imaging modalities. MindGrab's architecture is designed from first principles using a spectral interpretation of dilated convolutions, and demonstrates state-of-the-art performance (mean Dice score across datasets and modalities: 95.9 with SD 1.6), with up to 40-fold speedups and substantially lower memory demands compared to established methods. Its minimal footprint allows for fast, full-volume processing in resource-constrained environments, including direct in-browser execution. MindGrab is delivered via the BrainChop platform as both a simple command-line tool (pip install brainchop) and a zero-installation web application (brainchop.org). By removing traditional deployment barriers without sacrificing accuracy, MindGrab makes state-of-the-art neuroimaging analysis broadly accessible.
Key facts. No citing papers in the map yet (data through 14 Oct 2026). Builds on 7 of its 26 references that are in the map. First posted on arXiv 13 Jun 2025.
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7 of 26 references.
References · 7
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2015Multi-Scale Context Aggregation by Dilated Convolutionscited by 1,133
- 2021SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retrainingcited by 237
- 2017Understanding Convolution for Semantic Segmentationcited by 168
- 2022SynthStrip: Skull-Stripping for Any Brain Imagecited by 127
- 2021Rethinking Dilated Convolution for Real-time Semantic Segmentationcited by 11
- 2016End-to-end learning of brain tissue segmentation from imperfect labelingcited by 9
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