Optimal Transport Driven Asymmetric Image-to-Image Translation for Nuclei Segmentation of Histological Images
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Abstract (arXiv)
Segmentation of nuclei regions from histological images enables morphometric analysis of nuclei structures, which in turn helps in the detection and diagnosis of diseases under consideration. To develop a nuclei segmentation algorithm, applicable to different types of target domain representations, image-to-image translation networks can be considered as they are invariant to target domain image representations. One of the important issues with image-to-image translation models is that they fail miserably when the information content between two image domains are asymmetric in nature. In this regard, the paper introduces a new deep generative model for segmenting nuclei structures from histological images. The proposed model considers an embedding space for handling information-disparity between information-rich histological image space and information-poor segmentation map domain. Integrating judiciously the concepts of optimal transport and measure theory, the model develops an invertible generator, which provides an efficient optimization framework with lower network complexity. The concept of invertible generator automatically eliminates the need of any explicit cycle-consistency loss. The proposed model also introduces a spatially-constrained squeeze operation within the framework of invertible generator to maintain spatial continuity within the image patches. The model provides a better trade-off between network complexity and model performance compared to other existing models having complex network architectures. The performance of the proposed deep generative model, along with a comparison with state-of-the-art nuclei segmentation methods, is demonstrated on publicly available histological image data sets.
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References · 13
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2017Mask R-CNNcited by 7,277
- 2016Density estimation using Real NVPcited by 2,042
- 2018UNet++: A Nested U-Net Architecture for Medical Image Segmentationcited by 1,525
- 2018HoVer-Net: Simultaneous Segmentation and Classification of Nuclei in Multi-Tissue Histology Imagescited by 388
- 2018Micro-Net: A unified model for segmentation of various objects in microscopy imagescited by 56
- 2018Deep Adversarial Training for Multi-Organ Nuclei Segmentation in Histopathology Imagescited by 56
- 2021CoNIC: Colon Nuclei Identification and Counting Challenge 2022cited by 45
- 2022Nuclei instance segmentation and classification in histopathology images with StarDistcited by 31
- 2022Transformer based multiple instance learning for weakly supervised histopathology image segmentationcited by 26
- 2021Cycle-free CycleGAN using Invertible Generator for Unsupervised Low-Dose CT Denoisingcited by 15
- 2024BoNuS: Boundary Mining for Nuclei Segmentation with Partial Point Labelscited by 8
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