A Solid-State Nanopore Signal Generator for Training Machine Learning Models
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Abstract (arXiv)
Translocation event detection from raw nanopore current signals is a fundamental step in nanopore signal analysis. Traditional data analysis methods rely on user-defined parameters to extract event information, making the interpretation of experimental results sensitive to parameter choice. While Machine Learning (ML) has seen widespread adoption across various scientific fields, its potential remains underexplored in solid-state nanopore research. In this work, we introduce a nanopore signal generator capable of producing extensive synthetic datasets for machine learning applications and benchmarking nanopore signal analysis platforms. Using this generator, we train deep learning models to detect translocation events directly from raw signals, achieving over 99% true event detection with minimal false positives.
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References · 5
- 2014Adam: A Method for Stochastic Optimizationcited by 37,240
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2015Recent Advances in Convolutional Neural Networkscited by 360
- 2018A disciplined approach to neural network hyper-parameters: Part 1 -- learning rate, batch size, momentum, and weight decaycited by 226
- 2017Recent Advances in Recurrent Neural Networkscited by 89
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