From Patient Consultations to Graphs: Leveraging LLMs for Patient Journey Knowledge Graph Construction
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Abstract (arXiv)
The transition towards patient-centric healthcare necessitates a comprehensive understanding of patient journeys, which encompass all healthcare experiences and interactions across the care spectrum. Existing healthcare data systems are often fragmented and lack a holistic representation of patient trajectories, creating challenges for coordinated care and personalized interventions. Patient Journey Knowledge Graphs (PJKGs) represent a novel approach to addressing the challenge of fragmented healthcare data by integrating diverse patient information into a unified, structured representation. This paper presents a methodology for constructing PJKGs using Large Language Models (LLMs) to process and structure both formal clinical documentation and unstructured patient-provider conversations. These graphs encapsulate temporal and causal relationships among clinical encounters, diagnoses, treatments, and outcomes, enabling advanced temporal reasoning and personalized care insights. The research evaluates four different LLMs, such as Claude 3.5, Mistral, Llama 3.1, and Chatgpt4o, in their ability to generate accurate and computationally efficient knowledge graphs. Results demonstrate that while all models achieved perfect structural compliance, they exhibited variations in medical entity processing and computational efficiency. The paper concludes by identifying key challenges and future research directions. This work contributes to advancing patient-centric healthcare through the development of comprehensive, actionable knowledge graphs that support improved care coordination and outcome prediction.
Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 6 of its 21 references that are in the map. First posted on arXiv 18 Mar 2025.
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6 of 21 references.
References · 6
- 2022Multimodal Learning on Graphs for Disease Relation Extractioncited by 15
- 2019Robustly Extracting Medical Knowledge from EHRs: A Case Study of Learning a Health Knowledge Graphcited by 12
- 2024Patient-Centric Knowledge Graphs: A Survey of Current Methods, Challenges, and Applicationscited by 6
- 2024Structured Extraction of Real World Medical Knowledge using LLMs for Summarization and Searchcited by 3
- 2022Structural Quality Metrics to Evaluate Knowledge Graphscited by 2
- 2025Patient Journey Ontology: Representing Medical Encounters for Enhanced Patient-Centric Applicationscited by 1
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- 2023Leveraging Medical Knowledge Graphs Into Large Language Models for Diagnosis Prediction: Design and Application Study
- 2026HoT-SSM:Higher-order Temporal Knowledge Graph Reasoning with State Space Models for Health Care
- 2026Clinical Knowledge Graph Construction and Evaluation with Multi-LLMs via Retrieval-Augmented Generation
- 2025CliCARE: Grounding Large Language Models in Clinical Guidelines for Decision Support over Longitudinal Cancer Electronic Health Records
- 2025Reviewing Clinical Knowledge in Medical Large Language Models: Training and Beyond
- 2024HealthQ: Unveiling Questioning Capabilities of LLM Chains in Healthcare Conversations
- 2026InsightFlow: LLM-Driven Synthesis of Patient Narratives for Mental Health into Causal Models
- 2026GraphWalker: Patient Analogy Meets Information Gain for Clinical Reasoning with Large Language Models