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Unifying Multiple Foundation Models for Advanced Computational Pathology

arXiv 2503.00736 ↗First posted 2 Mar 2025cs.CVcited by 1

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Abstract (arXiv)

Foundation models have substantially advanced computational pathology by learning transferable visual representations from large histological datasets, yet their performance varies widely across tasks due to differences in training data composition and reliance on proprietary datasets that cannot be cumulatively expanded. Existing efforts to combine foundation models through offline distillation partially mitigate this issue but require dedicated distillation data and repeated retraining to integrate new models. Here we present Shazam, an online integration model that adaptively combines multiple pretrained pathology foundation models within a unified and scalable representation learning paradigm. Our findings show that fusing multi-level features through adaptive expert weighting and online distillation enables efficient consolidation of complementary model strengths without additional pretraining. Across spatial transcriptomics prediction, survival prognosis, tile-level classification, and visual question answering, Shazam consistently outperforms strong individual models, demonstrating that online model integration provides a practical and extensible strategy for advancing computational pathology.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 18 of its 52 references that are in the map. First posted on arXiv 2 Mar 2025.

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18 of 52 references.

References · 18

  1. 2016Layer Normalizationcited by 5,669
  2. 2022LAION-5B: An open large-scale dataset for training next generation image-text modelscited by 4,152
  3. 2021Switch Transformers: Scaling to Trillion Parameter Models with Simple and Efficient Sparsitycited by 3,073
  4. 2018Attention-based Deep Multiple Instance Learningcited by 1,095
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  6. 2020PathVQA: 30000+ Questions for Medical Visual Question Answeringcited by 475
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  8. 2024Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathologycited by 161
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  10. 2024HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysiscited by 107
  11. 2024Phikon-v2, A large and public feature extractor for biomarker predictioncited by 74
  12. 2024A Clinical Benchmark of Public Self-Supervised Pathology Foundation Modelscited by 66
6 more
  1. 2024Benchmarking foundation models as feature extractors for weakly-supervised computational pathologycited by 49
  2. 2021Hard Sample Aware Noise Robust Learning for Histopathology Image Classificationcited by 48
  3. 2025Distilling foundation models for robust and efficient models in digital pathologycited by 36
  4. 2021UniToPatho, a labeled histopathological dataset for colorectal polyps classification and adenoma dysplasia gradingcited by 33
  5. 2024Towards A Generalizable Pathology Foundation Model via Unified Knowledge Distillationcited by 31
  6. 2023Masked Vision and Language Pre-training with Unimodal and Multimodal Contrastive Losses for Medical Visual Question Answeringcited by 29

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