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OLS4: A new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem

arXiv 2501.13034 ↗First posted 22 Jan 2025cs.IRcited by 2

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Abstract (arXiv)

The Ontology Lookup Service (OLS) is an open source search engine for ontologies which is used extensively in the bioinformatics and chemistry communities to annotate biological and biomedical data with ontology terms. Recently there has been a significant increase in the size and complexity of ontologies due to new scales of biological knowledge, such as spatial transcriptomics, new ontology development methodologies, and curation on an increased scale. Existing Web-based tools for ontology browsing such as BioPortal and OntoBee do not support the full range of definitions used by today's ontologies. In order to support the community going forward, we have developed OLS4, implementing the complete OWL2 specification, internationalization support for multiple languages, and a new user interface with UX enhancements such as links out to external databases. OLS4 has replaced OLS3 in production at EMBL-EBI and has a backwards compatible API supporting users of OLS3 to transition.

Key facts. Cited by 2 papers in the map (data through 7 Oct 2026). First posted on arXiv 22 Jan 2025.

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