Leveraging Weak Supervision for Cell Localization in Digital Pathology Using Multitask Learning and Consistency Loss
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Abstract (arXiv)
Cell detection and segmentation are integral parts of automated systems in digital pathology. Encoder-decoder networks have emerged as a promising solution for these tasks. However, training of these networks has typically required full boundary annotations of cells, which are labor-intensive and difficult to obtain on a large scale. However, in many applications, such as cell counting, weaker forms of annotations--such as point annotations or approximate cell counts--can provide sufficient supervision for training. This study proposes a new mixed-supervision approach for training multitask networks in digital pathology by incorporating cell counts derived from the eyeballing process--a quick visual estimation method commonly used by pathologists. This study has two main contributions: (1) It proposes a mixed-supervision strategy for digital pathology that utilizes cell counts obtained by eyeballing as an auxiliary supervisory signal to train a multitask network for the first time. (2) This multitask network is designed to concurrently learn the tasks of cell counting and cell localization, and this study introduces a consistency loss that regularizes training by penalizing inconsistencies between the predictions of these two tasks. Our experiments on two datasets of hematoxylin-eosin stained tissue images demonstrate that the proposed approach effectively utilizes the weakest form of annotation, improving performance when stronger annotations are limited. These results highlight the potential of integrating eyeballing-derived ground truths into the network training, reducing the need for resource-intensive annotations.
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References · 15
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2021TransUNet: Transformers Make Strong Encoders for Medical Image Segmentationcited by 1,558
- 2018HoVer-Net: Simultaneous Segmentation and Classification of Nuclei in Multi-Tissue Histology Imagescited by 388
- 2021Mutual Consistency Learning for Semi-supervised Medical Image Segmentationcited by 108
- 2020Weakly Supervised Deep Nuclei Segmentation Using Partial Points Annotation in Histopathology Imagescited by 55
- 2022One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classificationcited by 38
- 2019PseudoEdgeNet: Nuclei Segmentation only with Point Annotationscited by 27
- 2021Medical Image Segmentation with Limited Supervision: A Review of Deep Network Modelscited by 22
- 2019Weakly Supervised Multi-Task Learning for Cell Detection and Segmentationcited by 16
- 2022Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and Co-Trainingcited by 16
- 2020Deeply-Supervised Density Regression for Automatic Cell Counting in Microscopy Imagescited by 12
- 2021Quick Annotator: an open-source digital pathology based rapid image annotation toolcited by 6
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- 2019ConCORDe-Net: Cell Count Regularized Convolutional Neural Network for Cell Detection in Multiplex Immunohistochemistry Imagescited by 4
- 2023Point-supervised Single-cell Segmentation via Collaborative Knowledge Sharingcited by 3
- 2023Scribble-supervised Cell Segmentation Using Multiscale Contrastive Regularizationcited by 2
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