mlsanityData to 7 Oct 2026

A Review on Scientific Knowledge Extraction using Large Language Models in Biomedical Sciences

arXiv 2412.03531 ↗First posted 4 Dec 2024cs.CL cs.LGcited by 5

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Abstract (arXiv)

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in the biomedical domain, exploring their effectiveness in automating complex tasks such as evidence synthesis and data extraction from a biomedical corpus of documents. While LLMs demonstrate remarkable potential, significant challenges remain, including issues related to hallucinations, contextual understanding, and the ability to generalize across diverse medical tasks. We highlight critical gaps in the current research literature, particularly the need for unified benchmarks to standardize evaluations and ensure reliability in real-world applications. In addition, we propose directions for future research, emphasizing the integration of state-of-the-art techniques such as retrieval-augmented generation (RAG) to enhance LLM performance in evidence synthesis. By addressing these challenges and utilizing the strengths of LLMs, we aim to improve access to medical literature and facilitate meaningful discoveries in healthcare.

Key facts. Cited by 5 papers in the map (data through 7 Oct 2026). Builds on 2 of its 23 references that are in the map. First posted on arXiv 4 Dec 2024.

Builds on

2 of 23 references.

References · 2

  1. 2024Artificial Intelligence for Literature Reviews: Opportunities and Challengescited by 30
  2. 2023Has It All Been Solved? Open NLP Research Questions Not Solved by Large Language Modelscited by 7

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2025: 3; 2026: 2.

5 papers.

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  1. 2024LLMs are not Zero-Shot Reasoners for Biomedical Information Extraction
  2. 2025Reviewing Clinical Knowledge in Medical Large Language Models: Training and Beyond
  3. 2026Harnessing Large Language Models for Precision Querying and Retrieval-Augmented Knowledge Extraction in Clinical Data Science
  4. 2023Biomedical knowledge graph-optimized prompt generation for large language models
  5. 2024LLMs in Biomedicine: A study on clinical Named Entity Recognition
  6. 2024A Survey for Large Language Models in Biomedicine
  7. 2024BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicine
  8. 2024LLM-IE: A Python Package for Generative Information Extraction with Large Language Models