Improving Scientific Hypothesis Generation with Knowledge Grounded Large Language Models
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Abstract (arXiv)
Large language models (LLMs) have demonstrated remarkable capabilities in various scientific domains, from natural language processing to complex problem-solving tasks. Their ability to understand and generate human-like text has opened up new possibilities for advancing scientific research, enabling tasks such as data analysis, literature review, and even experimental design. One of the most promising applications of LLMs in this context is hypothesis generation, where they can identify novel research directions by analyzing existing knowledge. However, despite their potential, LLMs are prone to generating ``hallucinations'', outputs that are plausible-sounding but factually incorrect. Such a problem presents significant challenges in scientific fields that demand rigorous accuracy and verifiability, potentially leading to erroneous or misleading conclusions. To overcome these challenges, we propose KG-CoI (Knowledge Grounded Chain of Ideas), a novel system that enhances LLM hypothesis generation by integrating external, structured knowledge from knowledge graphs (KGs). KG-CoI guides LLMs through a structured reasoning process, organizing their output as a chain of ideas (CoI), and includes a KG-supported module for the detection of hallucinations. With experiments on our newly constructed hypothesis generation dataset, we demonstrate that KG-CoI not only improves the accuracy of LLM-generated hypotheses but also reduces the hallucination in their reasoning chains, highlighting its effectiveness in advancing real-world scientific research.
Key facts. Cited by 21 papers in the map (data through 7 Oct 2026). Builds on 18 of its 30 references that are in the map. First posted on arXiv 4 Nov 2024.
Builds on
18 of 30 references.
References · 18
- 2021Training Verifiers to Solve Math Word Problemscited by 9,743
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- 2020REALM: Retrieval-Augmented Language Model Pre-Trainingcited by 2,126
- 2021Improving language models by retrieving from trillions of tokenscited by 1,278
- 2020Leveraging Passage Retrieval with Generative Models for Open Domain Question Answeringcited by 1,203
- 2022Interleaving Retrieval with Chain-of-Thought Reasoning for Knowledge-Intensive Multi-Step Questionscited by 911
- 2023Capabilities of GPT-4 on Medical Challenge Problemscited by 630
- 2023Trustworthy LLMs: a Survey and Guideline for Evaluating Large Language Models' Alignmentcited by 394
- 2024Retrieval-Augmented Generation for AI-Generated Content: A Surveycited by 352
- 2023Reasoning on Graphs: Faithful and Interpretable Large Language Model Reasoningcited by 326
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- 2024Benchmarking Retrieval-Augmented Generation for Medicinecited by 326
- 2019ScispaCy: Fast and Robust Models for Biomedical Natural Language Processingcited by 244
- 2023SciMON: Scientific Inspiration Machines Optimized for Noveltycited by 174
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Citing papers per year: 2025: 14; 2026: 7.
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- 2025Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoningcited by 33
- 2025Sparks of Science: Hypothesis Generation Using Structured Paper Datacited by 22
- 2025AI Scientists Fail Without Strong Implementation Capabilitycited by 20
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
- 2025A Survey of AI Scientistscited by 9
- 2025GPT-4.1 Sets the Standard in Automated Experiment Design Using Novel Python Librariescited by 8
- 2025Toward Reliable Scientific Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Modelscited by 7
- 2025Iterative Hypothesis Generation for Scientific Discovery with Monte Carlo Nash Equilibrium Self-Refining Treescited by 6
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gapcited by 6
- 2025From Reasoning to Learning: A Survey on Hypothesis Discovery and Rule Learning with Large Language Modelscited by 5
- 2025Deep Hierarchical Learning with Nested Subspace Networks for Large Language Modelscited by 5
- 2025ARCHE: A Novel Task to Evaluate LLMs on Latent Reasoning Chain Extractioncited by 3
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- 2026COMPOSE: Composing Future Theorems from Citations and Formal Structurecited by 2
- 2025Exploiting LLMs for Automatic Hypothesis Assessment via a Logit-Based Calibrated Priorcited by 1
- 2025Interestingness First Classifierscited by 1
- 2025GeoEvolve: Automating Geospatial Model Discovery via Multi-Agent Large Language Modelscited by 1
- 2026Grounding LLMs in Scientific Discovery via Embodied Actionscited by 0
- 2026Continuous Knowledge Metabolism: Generating Scientific Hypotheses from Evolving Literaturecited by 0
- 2026DN-Hypo-Pipeline: An AI-Driven Workflow for Generating Hypotheses using Large Language Models and Scientific Explanationscited by 0
- 2026Toward Auto-Research: Mining Falsifiable Research Ideas from Paper Knowledge Graphs with Categorical Structurecited by 0
- 2026MAIL: Memory-driven, Adaptive, Incremental, and Literature-grounded Framework for Hypothesis Generation in Chemistrycited by 0
- 2026MAIL: Memory-driven, Adaptive, Incremental, and Literature-grounded Framework for Hypothesis Generation in Chemistry28 Aug 2026
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gap29 Jun 2026
- 2026Toward Auto-Research: Mining Falsifiable Research Ideas from Paper Knowledge Graphs with Categorical Structure17 Jun 2026
- 2026DN-Hypo-Pipeline: An AI-Driven Workflow for Generating Hypotheses using Large Language Models and Scientific Explanations7 Jun 2026
- 2026COMPOSE: Composing Future Theorems from Citations and Formal Structure28 May 2026
- 2026Continuous Knowledge Metabolism: Generating Scientific Hypotheses from Evolving Literature14 Apr 2026
- 2026Grounding LLMs in Scientific Discovery via Embodied Actions24 Feb 2026
- 2025ARCHE: A Novel Task to Evaluate LLMs on Latent Reasoning Chain Extraction16 Nov 2025
- 2025A Survey of AI Scientists27 Oct 2025
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics10 Oct 2025
- 2025GeoEvolve: Automating Geospatial Model Discovery via Multi-Agent Large Language Models25 Sep 2025
- 2025Deep Hierarchical Learning with Nested Subspace Networks for Large Language Models22 Sep 2025
9 more
- 2025Interestingness First Classifiers27 Aug 2025
- 2025GPT-4.1 Sets the Standard in Automated Experiment Design Using Novel Python Libraries30 Jul 2025
- 2025Exploiting LLMs for Automatic Hypothesis Assessment via a Logit-Based Calibrated Prior3 Jun 2025
- 2025AI Scientists Fail Without Strong Implementation Capability2 Jun 2025
- 2025From Reasoning to Learning: A Survey on Hypothesis Discovery and Rule Learning with Large Language Models28 May 2025
- 2025Toward Reliable Scientific Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Models20 May 2025
- 2025Sparks of Science: Hypothesis Generation Using Structured Paper Data17 Apr 2025
- 2025Iterative Hypothesis Generation for Scientific Discovery with Monte Carlo Nash Equilibrium Self-Refining Trees25 Mar 2025
- 2025Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoning5 Feb 2025
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physicscited by 11
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gapcited by 6
- 2025GeoEvolve: Automating Geospatial Model Discovery via Multi-Agent Large Language Modelscited by 1
- 2026Autonomous Research Agents: A Survey of AI Scientists and the Verification Gap29 Jun 2026
- 2025Autonomous Agents for Scientific Discovery: Orchestrating Scientists, Language, Code, and Physics10 Oct 2025
- 2025GeoEvolve: Automating Geospatial Model Discovery via Multi-Agent Large Language Models25 Sep 2025
- 2025Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoningcited by 33
- 2025From Reasoning to Learning: A Survey on Hypothesis Discovery and Rule Learning with Large Language Modelscited by 5
- 2025ARCHE: A Novel Task to Evaluate LLMs on Latent Reasoning Chain Extractioncited by 3
- 2025ARCHE: A Novel Task to Evaluate LLMs on Latent Reasoning Chain Extraction16 Nov 2025
- 2025From Reasoning to Learning: A Survey on Hypothesis Discovery and Rule Learning with Large Language Models28 May 2025
- 2025Position: Multimodal Large Language Models Can Significantly Advance Scientific Reasoning5 Feb 2025
- 2025Sparks of Science: Hypothesis Generation Using Structured Paper Datacited by 22
- 2025AI Scientists Fail Without Strong Implementation Capabilitycited by 20
- 2025A Survey of AI Scientistscited by 9
- 2025GPT-4.1 Sets the Standard in Automated Experiment Design Using Novel Python Librariescited by 8
- 2025Toward Reliable Scientific Hypothesis Generation: Evaluating Truthfulness and Hallucination in Large Language Modelscited by 7
- 2025Iterative Hypothesis Generation for Scientific Discovery with Monte Carlo Nash Equilibrium Self-Refining Treescited by 6
- 2025Deep Hierarchical Learning with Nested Subspace Networks for Large Language Modelscited by 5
- 2026COMPOSE: Composing Future Theorems from Citations and Formal Structurecited by 2
- 2025Exploiting LLMs for Automatic Hypothesis Assessment via a Logit-Based Calibrated Priorcited by 1
- 2025Interestingness First Classifierscited by 1
- 2026Grounding LLMs in Scientific Discovery via Embodied Actionscited by 0
- 2026Continuous Knowledge Metabolism: Generating Scientific Hypotheses from Evolving Literaturecited by 0
12 most cited of 15 All 15 (JSON)
- 2026MAIL: Memory-driven, Adaptive, Incremental, and Literature-grounded Framework for Hypothesis Generation in Chemistry28 Aug 2026
- 2026Toward Auto-Research: Mining Falsifiable Research Ideas from Paper Knowledge Graphs with Categorical Structure17 Jun 2026
- 2026DN-Hypo-Pipeline: An AI-Driven Workflow for Generating Hypotheses using Large Language Models and Scientific Explanations7 Jun 2026
- 2026COMPOSE: Composing Future Theorems from Citations and Formal Structure28 May 2026
- 2026Continuous Knowledge Metabolism: Generating Scientific Hypotheses from Evolving Literature14 Apr 2026
- 2026Grounding LLMs in Scientific Discovery via Embodied Actions24 Feb 2026
- 2025A Survey of AI Scientists27 Oct 2025
- 2025Deep Hierarchical Learning with Nested Subspace Networks for Large Language Models22 Sep 2025
- 2025Interestingness First Classifiers27 Aug 2025
- 2025GPT-4.1 Sets the Standard in Automated Experiment Design Using Novel Python Libraries30 Jul 2025
- 2025Exploiting LLMs for Automatic Hypothesis Assessment via a Logit-Based Calibrated Prior3 Jun 2025
- 2025AI Scientists Fail Without Strong Implementation Capability2 Jun 2025
12 newest of 15 All 15 (JSON)
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- 2026Why LLMs Hallucinate on Structured Knowledge: A Mechanistic Analysis of Reasoning over Linearized Representations
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