mlsanityData to 14 Oct 2026

A High-Resolution, US-scale Digital Similar of Interacting Livestock, Wild Birds, and Human Ecosystems with Applications to Multi-host Epidemic Spread

arXiv 2411.01386 ↗First posted 3 Nov 2024cs.CEcited by 2

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Abstract (arXiv)

One Health issues, such as the spread of highly pathogenic avian influenza~(HPAI), present significant challenges at the human-animal-environmental interface. Recent H5N1 outbreaks underscore the need for comprehensive modeling efforts that capture the complex interactions between various entities in these interconnected ecosystems. To support such efforts, we develop a methodology to construct a synthetic spatiotemporal gridded dataset of livestock production and processing, human population, and wild birds for the contiguous United States, called a digital similar. This representation is a result of fusing diverse datasets using statistical and optimization techniques, followed by extensive verification and validation. The livestock component includes farm-level representations of four major livestock types -- cattle, poultry, swine, and sheep -- including further categorization into subtypes such as dairy cows, beef cows, chickens, turkeys, ducks, etc. Weekly abundance data for wild bird species identified in the transmission of avian influenza are included. Gridded distributions of the human population, along with demographic and occupational features, capture the placement of agricultural workers and the general population. We demonstrate how the digital similar can be applied to evaluate spillover risk to dairy cows and poultry from wild bird population, then validate these results using historical H5N1 incidences. The resulting subtype-specific spatiotemporal risk maps identify hotspots of high risk from H5N1 infected wild bird population to dairy cattle and poultry operations, thus guiding surveillance efforts.

Key facts. Cited by 2 papers in the map (data through 14 Oct 2026). First posted on arXiv 3 Nov 2024.

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