mlsanityData to 7 Oct 2026

Training-Free Guidance for Discrete Diffusion Models for Molecular Generation

arXiv 2409.07359 ↗First posted 11 Sep 2024stat.ML cs.LG physics.chem-phcited by 6

On the map: Diffusion models → Flow matching, time series and science

Abstract (arXiv)

Training-free guidance methods for continuous data have seen an explosion of interest due to the fact that they enable foundation diffusion models to be paired with interchangable guidance models. Currently, equivalent guidance methods for discrete diffusion models are unknown. We present a framework for applying training-free guidance to discrete data and demonstrate its utility on molecular graph generation tasks using the discrete diffusion model architecture of DiGress. We pair this model with guidance functions that return the proportion of heavy atoms that are a specific atom type and the molecular weight of the heavy atoms and demonstrate our method's ability to guide the data generation.

Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). Placed in Flow matching, time series and science, one of 14 directions in Diffusion models. Builds on 9 of its 13 references that are in the map. First posted on arXiv 11 Sep 2024.

Builds on

9 of 13 references.

Closest ancestors · 1

Same direction, newest first

  1. 2022DiGress: Discrete Denoising diffusion for graph generation29 Sep

Other references · 8

  1. 2021Diffusion Models Beat GANs on Image Synthesiscited by 8,185
  2. 2022Classifier-Free Diffusion Guidancecited by 5,717
  3. 2021Structured Denoising Diffusion Models in Discrete State-Spacescited by 1,665
  4. 2023Discrete Diffusion Modeling by Estimating the Ratios of the Data Distributioncited by 712
  5. 2023Universal Guidance for Diffusion Modelscited by 426
  6. 2023FreeDoM: Training-Free Energy-Guided Conditional Diffusion Modelcited by 290
  7. 2024Understanding and Improving Training-free Loss-based Diffusion Guidancecited by 31
  8. 2023Classifier-free graph diffusion for molecular property targetingcited by 13

Built on by

Cited by year (2026 to 7 Oct)

Citing papers per year: 2024: 1; 2025: 4; 2026: 1.

6 papers.

Similar, not cited

Close in wording, no citation either way

  1. 2025Graph Diffusion that can Insert and Delete
  2. 2025Composable Score-based Graph Diffusion Model for Multi-Conditional Molecular Generation
  3. 2024Simple Guidance Mechanisms for Discrete Diffusion Models
  4. 2024Chemistry-Inspired Diffusion with Non-Differentiable Guidance
  5. 2024Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
  6. 2024Unlocking Guidance for Discrete State-Space Diffusion and Flow Models
  7. 2023Conditional Diffusion Based on Discrete Graph Structures for Molecular Graph Generation
  8. 2026MolHIT: Advancing Molecular-Graph Generation with Hierarchical Discrete Diffusion Models