Many-Shot In-Context Learning for Molecular Inverse Design
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Abstract (arXiv)
Large Language Models (LLMs) have demonstrated great performance in few-shot In-Context Learning (ICL) for a variety of generative and discriminative chemical design tasks. The newly expanded context windows of LLMs can further improve ICL capabilities for molecular inverse design and lead optimization. To take full advantage of these capabilities we developed a new semi-supervised learning method that overcomes the lack of experimental data available for many-shot ICL. Our approach involves iterative inclusion of LLM generated molecules with high predicted performance, along with experimental data. We further integrated our method in a multi-modal LLM which allows for the interactive modification of generated molecular structures using text instructions. As we show, the new method greatly improves upon existing ICL methods for molecular design while being accessible and easy to use for scientists.
Key facts. Cited by 6 papers in the map (data through 14 Oct 2026). Builds on 8 of its 22 references that are in the map. First posted on arXiv 26 Jul 2024.
Builds on
8 of 22 references.
References · 8
- 2023Large Language Modelscited by 780
- 2023ChemCrow: Augmenting large-language models with chemistry toolscited by 631
- 2021Large-Scale Chemical Language Representations Capture Molecular Structure and Propertiescited by 206
- 2024Many-Shot In-Context Learningcited by 206
- 2024In-Context Learning with Long-Context Models: An In-Depth Explorationcited by 128
- 2023Can Large Language Models Empower Molecular Property Prediction?cited by 44
- 2020Scaffold-constrained molecular generationcited by 18
- 2024DrugLLM: Open Large Language Model for Few-shot Molecule Generationcited by 15
Built on by
Citing papers per year: 2024: 1; 2025: 4; 2026: 1.
6 papers.
- 2025A Survey of Scaling in Large Language Model Reasoningcited by 10
- 2025ExLLM: Experience-Enhanced LLM Optimization for Molecular Design and Beyondcited by 8
- 2024Auto-Demo Prompting: Leveraging Generated Outputs as Demonstrations for Enhanced Batch Promptingcited by 3
- 2025Towards Compute-Optimal Many-Shot In-Context Learningcited by 3
- 2026AdapShot: Adaptive Many-Shot In-Context Learning with Semantic-Aware KV Cache Reusecited by 1
- 2025Assay2Mol: large language model-based drug design using BioAssay contextcited by 0
- 2026AdapShot: Adaptive Many-Shot In-Context Learning with Semantic-Aware KV Cache Reuse5 May 2026
- 2025Towards Compute-Optimal Many-Shot In-Context Learning22 Jul 2025
- 2025Assay2Mol: large language model-based drug design using BioAssay context16 Jul 2025
- 2025A Survey of Scaling in Large Language Model Reasoning2 Apr 2025
- 2025ExLLM: Experience-Enhanced LLM Optimization for Molecular Design and Beyond18 Feb 2025
- 2024Auto-Demo Prompting: Leveraging Generated Outputs as Demonstrations for Enhanced Batch Prompting2 Oct 2024
Similar, not cited
Close in wording, no citation either way
- 2024Multimodal Large Language Models for Inverse Molecular Design with Retrosynthetic Planning
- 2026Training Large Language Models for Small-Molecule Design with Synthetic Task Scaling
- 2026Evaluating the Progression of Large Language Model Capabilities for Small-Molecule Drug Design
- 2024MolecularGPT: Open Large Language Model (LLM) for Few-Shot Molecular Property Prediction
- 2025ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model
- 2025Atom-anchored LLMs speak Chemistry: A Retrosynthesis Demonstration
- 2025Mol-LLM: Multimodal Generalist Molecular LLM with Improved Graph Utilization
- 2024Crossing New Frontiers: Knowledge-Augmented Large Language Model Prompting for Zero-Shot Text-Based De Novo Molecule Design