SE(3)-Hyena Operator for Scalable Equivariant Learning
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Abstract (arXiv)
Modeling global geometric context while maintaining equivariance is crucial for accurate predictions in many fields such as biology, chemistry, or vision. Yet, this is challenging due to the computational demands of processing high-dimensional data at scale. Existing approaches such as equivariant self-attention or distance-based message passing, suffer from quadratic complexity with respect to sequence length, while localized methods sacrifice global information. Inspired by the recent success of state-space and long-convolutional models, in this work, we introduce SE(3)-Hyena operator, an equivariant long-convolutional model based on the Hyena operator. The SE(3)-Hyena captures global geometric context at sub-quadratic complexity while maintaining equivariance to rotations and translations. Evaluated on equivariant associative recall and n-body modeling, SE(3)-Hyena matches or outperforms equivariant self-attention while requiring significantly less memory and computational resources for long sequences. Our model processes the geometric context of 20k tokens x3.5 times faster than the equivariant transformer and allows x175 longer a context within the same memory budget.
Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). Builds on 47 of its 61 references that are in the map. First posted on arXiv 1 Jul 2024.
Builds on
47 of 61 references.
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35 more
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Built on by
Citing papers per year: 2024: 2; 2025: 3; 2026: 1.
6 papers.
- 2024HELM: Hierarchical Encoding for mRNA Language Modelingcited by 9
- 2024Beyond Sequence: Impact of Geometric Context for RNA Property Predictioncited by 8
- 2025DualEquiNet: A Dual-Space Hierarchical Equivariant Network for Large Biomoleculescited by 5
- 2025Clebsch-Gordan Transformer: Fast and Global Equivariant Attentioncited by 1
- 2025HyperHELM: Hyperbolic Hierarchy Encoding for mRNA Language Modelingcited by 0
- 2026Breaking the Bottlenecks: Scalable Diffusion Models for 3D Molecular Generationcited by 0
- 2026Breaking the Bottlenecks: Scalable Diffusion Models for 3D Molecular Generation13 Jan 2026
- 2025HyperHELM: Hyperbolic Hierarchy Encoding for mRNA Language Modeling29 Sep 2025
- 2025Clebsch-Gordan Transformer: Fast and Global Equivariant Attention28 Sep 2025
- 2025DualEquiNet: A Dual-Space Hierarchical Equivariant Network for Large Biomolecules10 Jun 2025
- 2024HELM: Hierarchical Encoding for mRNA Language Modeling16 Oct 2024
- 2024Beyond Sequence: Impact of Geometric Context for RNA Property Prediction15 Oct 2024