IR2QSM: Quantitative Susceptibility Mapping via Deep Neural Networks with Iterative Reverse Concatenations and Recurrent Modules
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Abstract (arXiv)
Quantitative susceptibility mapping (QSM) is an MRI phase-based post-processing technique to extract the distribution of tissue susceptibilities, demonstrating significant potential in studying neurological diseases. However, the ill-conditioned nature of dipole inversion makes QSM reconstruction from the tissue field prone to noise and artifacts. In this work, we propose a novel deep learning-based IR2QSM method for QSM reconstruction. It is designed by iterating four times of a reverse concatenations and middle recurrent modules enhanced U-net, which could dramatically improve the efficiency of latent feature utilization. Simulated and in vivo experiments were conducted to compare IR2QSM with several traditional algorithms (MEDI and iLSQR) and state-of-the-art deep learning methods (U-net, xQSM, and LPCNN). The results indicated that IR2QSM was able to obtain QSM images with significantly increased accuracy and mitigated artifacts over other methods. Particularly, IR2QSM demonstrated on average the best NRMSE (27.59%) in simulated experiments, which is 15.48%, 7.86%, 17.24%, 9.26%, and 29.13% lower than iLSQR, MEDI, U-net, xQSM, LPCNN, respectively, and led to improved QSM results with fewer artifacts for the in vivo data.
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References · 14
- 2018Fundamentals of Recurrent Neural Network (RNN) and Long Short-Term Memory (LSTM) Networkcited by 415
- 2018Recurrent Residual Convolutional Neural Network based on U-Net (R2U-Net) for Medical Image Segmentationcited by 180
- 2019Recurrent U-Net for Resource-Constrained Segmentationcited by 27
- 2018Quantitative Susceptibility Mapping using Deep Neural Network: QSMnetcited by 24
- 2019Exploring linearity of deep neural network trained QSM: QSMnet+cited by 11
- 2019QSMGAN: Improved Quantitative Susceptibility Mapping using 3D Generative Adversarial Networks with Increased Receptive Fieldcited by 10
- 2020Learned Proximal Networks for Quantitative Susceptibility Mappingcited by 10
- 2021MoDL-QSM: Model-based Deep Learning for Quantitative Susceptibility Mappingcited by 8
- 2019Overview of quantitative susceptibility mapping using deep learning -- Current status, challenges and opportunitiescited by 7
- 2019Learning-based Single-step Quantitative Susceptibility Mapping Reconstruction Without Brain Extractioncited by 5
- 2021Instant tissue field and magnetic susceptibility mapping from MR raw phase using Laplacian enabled deep neural networkscited by 5
- 2023Quantitative Susceptibility Mapping through Model-based Deep Image Prior (MoDIP)cited by 4
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