Gradient Propagation in Retrosynthetic Space: An Efficient Framework for Synthesis Plan Generation
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Abstract (arXiv)
Retrosynthesis, which aims to identify viable synthetic pathways for target molecules by decomposing them into simpler precursors, is often treated as a search problem. However, its complexity arises from multi-branched tree-structured pathways rather than linear paths. Some algorithms have been successfully applied in this task, but they either overlook the uncertainties inherent in chemical space or face limitations in practical application scenarios. To address these challenges, this paper introduces a novel gradient-propagation-based algorithmic framework for retrosynthetic route exploration. The proposed framework obtains the contributions of different nodes to the target molecule's success probability through gradient propagation and then guides the algorithm to greedily select the node with the highest contribution for expansion, thereby conducting efficient search in the chemical space. Experimental validations demonstrate that our algorithm achieves broad applicability across diverse molecular targets and exhibits superior computational efficiency compared to existing methods.
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References · 10
- 2016An overview of gradient descent optimization algorithmscited by 1,033
- 2018GuacaMol: Benchmarking Models for De Novo Molecular Designcited by 297
- 2015Coordinate Descent Algorithmscited by 219
- 2017Learning to Plan Chemical Synthesescited by 179
- 2020Retrosynthesis Prediction with Conditional Graph Logic Networkcited by 104
- 2017Predicting Organic Reaction Outcomes with Weisfeiler-Lehman Networkcited by 103
- 2017Retrosynthetic reaction prediction using neural sequence-to-sequence modelscited by 86
- 2020Retro*: Learning Retrosynthetic Planning with Neural Guided A* Searchcited by 76
- 2020Learning To Navigate The Synthetically Accessible Chemical Space Using Reinforcement Learningcited by 57
- 2023Retro-fallback: retrosynthetic planning in an uncertain worldcited by 16
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