scInterpreter: Training Large Language Models to Interpret scRNA-seq Data for Cell Type Annotation
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Abstract (arXiv)
Despite the inherent limitations of existing Large Language Models in directly reading and interpreting single-cell omics data, they demonstrate significant potential and flexibility as the Foundation Model. This research focuses on how to train and adapt the Large Language Model with the capability to interpret and distinguish cell types in single-cell RNA sequencing data. Our preliminary research results indicate that these foundational models excel in accurately categorizing known cell types, demonstrating the potential of the Large Language Models as effective tools for uncovering new biological insights.
Key facts. Cited by 5 papers in the map (data through 14 Oct 2026). Builds on 2 of its 6 references that are in the map. First posted on arXiv 18 Feb 2024.
Builds on
2 of 6 references.
References · 2
- 2023LLaMA: Open and Efficient Foundation Language Modelscited by 14,132
- 2023A Comprehensive Capability Analysis of GPT-3 and GPT-3.5 Series Modelscited by 246
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Citing papers per year: 2024: 2; 2025: 3.
5 papers.
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- 2025SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypescited by 0
- 2025DiagnoLLM: A Hybrid Bayesian Neural Language Framework for Interpretable Disease Diagnosis8 Nov 2025
- 2025SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypes7 Jul 2025
- 2025scAgent: Universal Single-Cell Annotation via a LLM Agent7 Apr 2025
- 2024GeneSUM: Large Language Model-based Gene Summary Extraction24 Dec 2024
- 2024Does your model understand genes? A benchmark of gene properties for biological and text models5 Dec 2024