mlsanityData to 7 Oct 2026

Stable Online and Offline Reinforcement Learning for Antibody CDRH3 Design

arXiv 2401.05341 ↗First posted 29 Nov 2023q-bio.BM cs.LGcited by 0

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Abstract (arXiv)

The field of antibody-based therapeutics has grown significantly in recent years, with targeted antibodies emerging as a potentially effective approach to personalized therapies. Such therapies could be particularly beneficial for complex, highly individual diseases such as cancer. However, progress in this field is often constrained by the extensive search space of amino acid sequences that form the foundation of antibody design. In this study, we introduce a novel reinforcement learning method specifically tailored to address the unique challenges of this domain. We demonstrate that our method can learn the design of high-affinity antibodies against multiple targets in silico, utilizing either online interaction or offline datasets. To the best of our knowledge, our approach is the first of its kind and outperforms existing methods on all tested antigens in the Absolut! database.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 11 of its 26 references that are in the map. First posted on arXiv 29 Nov 2023.

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11 of 26 references.

References · 11

  1. 2020Language Models are Few-Shot Learnerscited by 32,199
  2. 2020Offline Reinforcement Learning: Tutorial, Review, and Perspectives on Open Problemscited by 1,873
  3. 2015Prioritized Experience Replaycited by 1,070
  4. 2023Efficient Online Reinforcement Learning with Offline Datacited by 332
  5. 2021Uncertainty-Based Offline Reinforcement Learning with Diversified Q-Ensemblecited by 297
  6. 2022Biological Sequence Design with GFlowNetscited by 172
  7. 2020Maxmin Q-learning: Controlling the Estimation Bias of Q-learningcited by 117
  8. 2021Conservative Objective Models for Effective Offline Model-Based Optimizationcited by 87
  9. 2023Ankh: Optimized Protein Language Model Unlocks General-Purpose Modellingcited by 44
  10. 2022AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisationcited by 14
  11. 2022Structured Q-learning For Antibody Designcited by 2

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  3. 2024Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization
  4. 2026Antigen-specific Antibody Multi-modal Foundation Model for Functional Antibody Design
  5. 2024Pareto-Optimal Energy Alignment for Designing Nature-Like Antibodies
  6. 2025AbFlowNet: Optimizing Antibody-Antigen Binding Energy via Diffusion-GFlowNet Fusion
  7. 2025Guided Sequence-Structure Generative Modeling for Iterative Antibody Optimization
  8. 2025Antibody Design and Optimization with Multi-scale Equivariant Graph Diffusion Models for Accurate Complex Antigen Binding