mlsanityData to 14 Oct 2026

On the importance of catalyst-adsorbate 3D interactions for relaxed energy predictions

arXiv 2310.06682 ↗First posted 10 Oct 2023cs.LGcited by 1

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Abstract (arXiv)

The use of machine learning for material property prediction and discovery has traditionally centered on graph neural networks that incorporate the geometric configuration of all atoms. However, in practice not all this information may be readily available, e.g.~when evaluating the potentially unknown binding of adsorbates to catalyst. In this paper, we investigate whether it is possible to predict a system's relaxed energy in the OC20 dataset while ignoring the relative position of the adsorbate with respect to the electro-catalyst. We consider SchNet, DimeNet++ and FAENet as base architectures and measure the impact of four modifications on model performance: removing edges in the input graph, pooling independent representations, not sharing the backbone weights and using an attention mechanism to propagate non-geometric relative information. We find that while removing binding site information impairs accuracy as expected, modified models are able to predict relaxed energies with remarkably decent MAE. Our work suggests future research directions in accelerated materials discovery where information on reactant configurations can be reduced or altogether omitted.

Key facts. Cited by 1 paper in the map (data through 14 Oct 2026). Builds on 15 of its 31 references that are in the map. First posted on arXiv 10 Oct 2023.

Builds on

15 of 31 references.

References · 15

  1. 2017Graph Attention Networkscited by 8,923
  2. 2017Neural Message Passing for Quantum Chemistrycited by 3,487
  3. 2017SchNet: A continuous-filter convolutional neural network for modeling quantum interactionscited by 571
  4. 2022Learning Local Equivariant Representations for Large-Scale Atomistic Dynamicscited by 256
  5. 2020Fast and Uncertainty-Aware Directional Message Passing for Non-Equilibrium Moleculescited by 255
  6. 2020The Open Catalyst 2020 (OC20) Dataset and Community Challengescited by 246
  7. 2023Reducing SO(3) Convolutions to SO(2) for Efficient Equivariant GNNscited by 117
  8. 2023FAENet: Frame Averaging Equivariant GNN for Materials Modelingcited by 73
  9. 2022GemNet-OC: Developing Graph Neural Networks for Large and Diverse Molecular Simulation Datasetscited by 61
  10. 2020An Introduction to Electrocatalyst Design using Machine Learning for Renewable Energy Storagecited by 45
  11. 2023A Survey on Graph Diffusion Models: Generative AI in Science for Molecule, Protein and Materialcited by 35
  12. 2023MatSci-NLP: Evaluating Scientific Language Models on Materials Science Language Tasks Using Text-to-Schema Modelingcited by 35
3 more
  1. 2022The Open MatSci ML Toolkit: A Flexible Framework for Machine Learning in Materials Sciencecited by 14
  2. 2023MatSciML: A Broad, Multi-Task Benchmark for Solid-State Materials Modelingcited by 14
  3. 2022PhAST: Physics-Aware, Scalable, and Task-specific GNNs for Accelerated Catalyst Designcited by 6

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