Look Ma, no code: fine tuning nnU-Net for the AutoPET II challenge by only adjusting its JSON plans
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Abstract (arXiv)
We participate in the AutoPET II challenge by modifying nnU-Net only through its easy to understand and modify 'nnUNetPlans.json' file. By switching to a UNet with residual encoder, increasing the batch size and increasing the patch size we obtain a configuration that substantially outperforms the automatically configured nnU-Net baseline (5-fold cross-validation Dice score of 65.14 vs 33.28) at the expense of increased compute requirements for model training. Our final submission ensembles the two most promising configurations.
Key facts. Cited by 2 papers in the map (data through 14 Oct 2026). Builds on 8 of its 10 references that are in the map. First posted on arXiv 24 Sep 2023.
Builds on
8 of 10 references.
References · 8
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2021The Medical Segmentation Decathloncited by 628
- 2019The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challengecited by 190
- 2020nnU-Net for Brain Tumor Segmentationcited by 103
- 2022Overview of the HECKTOR Challenge at MICCAI 2021: Automatic Head and Neck Tumor Segmentation and Outcome Prediction in PET/CT Imagescited by 30
- 2020Studying Robustness of Semantic Segmentation under Domain Shift in cardiac MRIcited by 28
- 2022Extending nnU-Net is all you needcited by 22
- 2019An attempt at beating the 3D U-Netcited by 21
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Citing papers per year: 2024: 1; 2025: 0; 2026: 1.
2 papers.