The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI
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Abstract (arXiv)
The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space.The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment.
Key facts. Cited by 35 papers in the map (data through 7 Oct 2026). First posted on arXiv 1 Jun 2023.
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Citing papers per year: 2023: 2; 2024: 9; 2025: 15; 2026: 9.
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- 2024The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRIcited by 65
- 2024Foundation Models for Biomedical Image Segmentation: A Surveycited by 28
- 2024AutoRG-Brain: Grounded Report Generation for Brain MRIcited by 23
- 20233D TransUNet: Advancing Medical Image Segmentation through Vision Transformerscited by 20
- 2025Towards Scalable Language-Image Pre-training for 3D Medical Imagingcited by 13
- 2023Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation mapscited by 11
- 2025A large-scale heterogeneous 3D magnetic resonance brain imaging dataset for self-supervised learningcited by 7
- 2025OmniBrainBench: A Comprehensive Multimodal Benchmark for Brain Imaging Analysis Across Multi-stage Clinical Taskscited by 7
- 2024Diffuse-UDA: Addressing Unsupervised Domain Adaptation in Medical Image Segmentation with Appearance and Structure Aligned Diffusion Modelscited by 6
- 2025Performance of GPT-5 in Brain Tumor MRI Reasoningcited by 5
- 20243D-TransUNet for Brain Metastases Segmentation in the BraTS2023 Challengecited by 4
- 2025BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesiscited by 4
23 more
- 2026Agentic Large Language Models for Training-Free Neuro-Radiological Image Analysiscited by 4
- 2026BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learningcited by 4
- 2024On Enhancing Brain Tumor Segmentation Across Diverse Populations with Convolutional Neural Networkscited by 3
- 2025Learning to Look Closer: A New Instance-Wise Loss for Small Cerebral Lesion Segmentationcited by 3
- 2025Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence: a multi-cohort retrospective diagnostic accuracy studycited by 2
- 2025The Missing Piece: A Case for Pre-Training in 3D Medical Object Detectioncited by 2
- 2025The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learningcited by 2
- 2024Gadolinium dose reduction for brain MRI using conditional deep learningcited by 1
- 2024Multiscale Encoder and Omni-Dimensional Dynamic Convolution Enrichment in nnU-Net for Brain Tumor Segmentationcited by 1
- 2025MultiMAE for Brain MRIs: Robustness to Missing Inputs Using Multi-Modal Masked Autoencodercited by 1
- 2024SegBook: A Simple Baseline and Cookbook for Volumetric Medical Image Segmentationcited by 0
- 2025Automatic and standardized surgical reporting for central nervous system tumorscited by 0
- 2025AI-based response assessment and prediction in longitudinal imaging for brain metastases treated with stereotactic radiosurgerycited by 0
- 2025Synergistic Modality-and-Slice Memory Framework for Cross-Modal 3D Brain Tumor Segmentationcited by 0
- 2025A unified FLAIR hyperintensity segmentation model for various CNS tumor types and acquisition time pointscited by 0
- 2025Bidirectional human-AI collaboration in brain tumour assessments improves both expert human and AI agent performancecited by 0
- 2026An Explainable AI-Driven Framework for Automated Brain Tumor Segmentation Using an Attention-Enhanced U-Netcited by 0
- 2026VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translationcited by 0
- 2026Beyond Instance-Level Self-Supervision in 3D Multi-Modal Medical Imagingcited by 0
- 2026SegGuidedNet: Sub-Region-Aware Attention Supervision for Interpretable Brain Tumor Segmentationcited by 0
- 2026A continually expandable foundation model for brain MRIcited by 0
- 2026Scale-Aware 3D Deep Learning for Robust Brain Metastasis Detection in Multimodal MRIcited by 0
- 2026CarveMix-RC: Addressing Rare-Class Imbalance Through Lesion-Aware Synthetic Augmentation for Brain Metastasis Segmentationcited by 0
- 2026CarveMix-RC: Addressing Rare-Class Imbalance Through Lesion-Aware Synthetic Augmentation for Brain Metastasis Segmentation28 Sep 2026
- 2026Scale-Aware 3D Deep Learning for Robust Brain Metastasis Detection in Multimodal MRI9 Sep 2026
- 2026A continually expandable foundation model for brain MRI8 Aug 2026
- 2026SegGuidedNet: Sub-Region-Aware Attention Supervision for Interpretable Brain Tumor Segmentation21 May 2026
- 2026Beyond Instance-Level Self-Supervision in 3D Multi-Modal Medical Imaging14 May 2026
- 2026BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning30 Apr 2026
- 2026VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translation24 Apr 2026
- 2026Agentic Large Language Models for Training-Free Neuro-Radiological Image Analysis17 Apr 2026
- 2026An Explainable AI-Driven Framework for Automated Brain Tumor Segmentation Using an Attention-Enhanced U-Net24 Mar 2026
- 2025A unified FLAIR hyperintensity segmentation model for various CNS tumor types and acquisition time points19 Dec 2025
- 2025Bidirectional human-AI collaboration in brain tumour assessments improves both expert human and AI agent performance13 Dec 2025
- 2025The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning5 Dec 2025
23 more
- 2025Learning to Look Closer: A New Instance-Wise Loss for Small Cerebral Lesion Segmentation21 Nov 2025
- 2025OmniBrainBench: A Comprehensive Multimodal Benchmark for Brain Imaging Analysis Across Multi-stage Clinical Tasks2 Nov 2025
- 2025Synergistic Modality-and-Slice Memory Framework for Cross-Modal 3D Brain Tumor Segmentation12 Oct 2025
- 2025The Missing Piece: A Case for Pre-Training in 3D Medical Object Detection19 Sep 2025
- 2025MultiMAE for Brain MRIs: Robustness to Missing Inputs Using Multi-Modal Masked Autoencoder14 Sep 2025
- 2025AI-based response assessment and prediction in longitudinal imaging for brain metastases treated with stereotactic radiosurgery8 Sep 2025
- 2025Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence: a multi-cohort retrospective diagnostic accuracy study19 Aug 2025
- 2025Performance of GPT-5 in Brain Tumor MRI Reasoning14 Aug 2025
- 2025Automatic and standardized surgical reporting for central nervous system tumors12 Aug 2025
- 2025A large-scale heterogeneous 3D magnetic resonance brain imaging dataset for self-supervised learning17 Jun 2025
- 2025Towards Scalable Language-Image Pre-training for 3D Medical Imaging28 May 2025
- 2025BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesis6 Apr 2025
- 2024SegBook: A Simple Baseline and Cookbook for Volumetric Medical Image Segmentation21 Nov 2024
- 2024Multiscale Encoder and Omni-Dimensional Dynamic Convolution Enrichment in nnU-Net for Brain Tumor Segmentation20 Sep 2024
- 2024Diffuse-UDA: Addressing Unsupervised Domain Adaptation in Medical Image Segmentation with Appearance and Structure Aligned Diffusion Models12 Aug 2024
- 2024AutoRG-Brain: Grounded Report Generation for Brain MRI23 Jul 2024
- 2024The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI28 May 2024
- 2024On Enhancing Brain Tumor Segmentation Across Diverse Populations with Convolutional Neural Networks5 May 2024
- 20243D-TransUNet for Brain Metastases Segmentation in the BraTS2023 Challenge23 Mar 2024
- 2024Gadolinium dose reduction for brain MRI using conditional deep learning6 Mar 2024
- 2024Foundation Models for Biomedical Image Segmentation: A Survey15 Jan 2024
- 2023Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps5 Dec 2023
- 20233D TransUNet: Advancing Medical Image Segmentation through Vision Transformers11 Oct 2023
- 2024Diffuse-UDA: Addressing Unsupervised Domain Adaptation in Medical Image Segmentation with Appearance and Structure Aligned Diffusion Modelscited by 6
- 2025BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesiscited by 4
- 2026VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translationcited by 0
- 2026VS-DDPM: Efficient Low-Cost Diffusion Model for Medical Modality Translation24 Apr 2026
- 2025BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesis6 Apr 2025
- 2024Diffuse-UDA: Addressing Unsupervised Domain Adaptation in Medical Image Segmentation with Appearance and Structure Aligned Diffusion Models12 Aug 2024
- 2025Performance of GPT-5 in Brain Tumor MRI Reasoningcited by 5
- 2025Performance of GPT-5 in Brain Tumor MRI Reasoning14 Aug 2025
- 2024The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRIcited by 65
- 2024Foundation Models for Biomedical Image Segmentation: A Surveycited by 28
- 2024AutoRG-Brain: Grounded Report Generation for Brain MRIcited by 23
- 20233D TransUNet: Advancing Medical Image Segmentation through Vision Transformerscited by 20
- 2025Towards Scalable Language-Image Pre-training for 3D Medical Imagingcited by 13
- 2023Panoptica -- instance-wise evaluation of 3D semantic and instance segmentation mapscited by 11
- 2025A large-scale heterogeneous 3D magnetic resonance brain imaging dataset for self-supervised learningcited by 7
- 20243D-TransUNet for Brain Metastases Segmentation in the BraTS2023 Challengecited by 4
- 2026BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learningcited by 4
- 2024On Enhancing Brain Tumor Segmentation Across Diverse Populations with Convolutional Neural Networkscited by 3
- 2025Learning to Look Closer: A New Instance-Wise Loss for Small Cerebral Lesion Segmentationcited by 3
- 2025Predicting brain tumour enhancement from non-contrast MR imaging with artificial intelligence: a multi-cohort retrospective diagnostic accuracy studycited by 2
12 most cited of 29 All 29 (JSON)
- 2026CarveMix-RC: Addressing Rare-Class Imbalance Through Lesion-Aware Synthetic Augmentation for Brain Metastasis Segmentation28 Sep 2026
- 2026Scale-Aware 3D Deep Learning for Robust Brain Metastasis Detection in Multimodal MRI9 Sep 2026
- 2026A continually expandable foundation model for brain MRI8 Aug 2026
- 2026SegGuidedNet: Sub-Region-Aware Attention Supervision for Interpretable Brain Tumor Segmentation21 May 2026
- 2026Beyond Instance-Level Self-Supervision in 3D Multi-Modal Medical Imaging14 May 2026
- 2026BrainDINO: A Brain MRI Foundation Model for Generalizable Clinical Representation Learning30 Apr 2026
- 2026An Explainable AI-Driven Framework for Automated Brain Tumor Segmentation Using an Attention-Enhanced U-Net24 Mar 2026
- 2025A unified FLAIR hyperintensity segmentation model for various CNS tumor types and acquisition time points19 Dec 2025
- 2025Bidirectional human-AI collaboration in brain tumour assessments improves both expert human and AI agent performance13 Dec 2025
- 2025The MICCAI Federated Tumor Segmentation (FeTS) Challenge 2024: Efficient and Robust Aggregation Methods for Federated Learning5 Dec 2025
- 2025Learning to Look Closer: A New Instance-Wise Loss for Small Cerebral Lesion Segmentation21 Nov 2025
- 2025Synergistic Modality-and-Slice Memory Framework for Cross-Modal 3D Brain Tumor Segmentation12 Oct 2025
12 newest of 29 All 29 (JSON)