Semi-Supervised Segmentation of Functional Tissue Units at the Cellular Level
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Abstract (arXiv)
We present a new method for functional tissue unit segmentation at the cellular level, which utilizes the latest deep learning semantic segmentation approaches together with domain adaptation and semi-supervised learning techniques. This approach allows for minimizing the domain gap, class imbalance, and captures settings influence between HPA and HubMAP datasets. The presented approach achieves comparable with state-of-the-art-result in functional tissue unit segmentation at the cellular level. The source code is available at https://github.com/VSydorskyy/hubmap_2022_htt_solution
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References · 19
- 2014Adam: A Method for Stochastic Optimizationcited by 37,240
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
- 2015U-Net: Convolutional Networks for Biomedical Image Segmentationcited by 19,713
- 2019EfficientNet: Rethinking Model Scaling for Convolutional Neural Networkscited by 6,442
- 2017mixup: Beyond Empirical Risk Minimizationcited by 5,183
- 2016Feature Pyramid Networks for Object Detectioncited by 5,036
- 2014Fully Convolutional Networks for Semantic Segmentationcited by 4,859
- 2019CutMix: Regularization Strategy to Train Strong Classifiers with Localizable Featurescited by 2,884
- 2017Rethinking Atrous Convolution for Semantic Image Segmentationcited by 2,161
- 2018UNet++: A Nested U-Net Architecture for Medical Image Segmentationcited by 1,525
- 2018Averaging Weights Leads to Wider Optima and Better Generalizationcited by 1,209
- 2019On the Variance of the Adaptive Learning Rate and Beyondcited by 772
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- 2019PointRend: Image Segmentation as Renderingcited by 440
- 2019Lookahead Optimizer: k steps forward, 1 step backcited by 336
- 2021TransMix: Attend to Mix for Vision Transformerscited by 79
- 2021RegNet: Self-Regulated Network for Image Classificationcited by 44
- 2017Domain-adversarial neural networks to address the appearance variability of histopathology imagescited by 41
- 2015The Lov'asz Hinge: A Novel Convex Surrogate for Submodular Lossescited by 17
- 2019Semi-Supervised Segmentation of Salt Bodies in Seismic Images using an Ensemble of Convolutional Neural Networkscited by 9
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