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On the Potential of Artificial Intelligence Chatbots for Data Exploration of Federated Bioinformatics Knowledge Graphs

arXiv 2304.10427 ↗First posted 20 Apr 2023cs.AIcited by 9

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Abstract (arXiv)

In this paper, we present work in progress on the role of artificial intelligence (AI) chatbots, such as ChatGPT, in facilitating data access to federated knowledge graphs. In particular, we provide examples from the field of bioinformatics, to illustrate the potential use of Conversational AI to describe datasets, as well as generate and explain (federated) queries across datasets for the benefit of domain experts.

Key facts. Cited by 9 papers in the map (data through 7 Oct 2026). Builds on 2 of its 12 references that are in the map. First posted on arXiv 20 Apr 2023.

Builds on

2 of 12 references.

References · 2

  1. 2023LLaMA: Open and Efficient Foundation Language Modelscited by 13,958
  2. 2023ChatGPT versus Traditional Question Answering for Knowledge Graphs: Current Status and Future Directions Towards Knowledge Graph Chatbotscited by 47

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Cited by year

Citing papers per year: 2023: 2; 2024: 4; 2025: 3.

9 papers.

  1. 2024LLM-based SPARQL Query Generation from Natural Language over Federated Knowledge Graphscited by 22
  2. 2024SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graphcited by 19
  3. 2023Can ChatGPT advance software testing intelligence? An experience report on metamorphic testingcited by 6
  4. 2024Bioinformatics and Biomedical Informatics with ChatGPT: Year One Reviewcited by 4
  5. 2023GenSpectrum Chat: Data Exploration in Public Health Using Large Language Modelscited by 2
  6. 2024A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applicationscited by 2
  7. 2025SPARQL-LLM: Real-Time SPARQL Query Generation from Natural Language Questionscited by 2
  8. 2025Integrating Artificial Intelligence with Human Expertise: An In-depth Analysis of ChatGPT's Capabilities in Generating Metamorphic Relationscited by 0
  9. 2025MetaboT: An LLM-based Multi-Agent Frameworkfor Interactive Analysis of Mass SpectrometryMetabolomics Knowledge Graphscited by 0