Hierarchical Graph Neural Networks for Causal Discovery and Root Cause Localization
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Abstract (arXiv)
In this paper, we propose REASON, a novel framework that enables the automatic discovery of both intra-level (i.e., within-network) and inter-level (i.e., across-network) causal relationships for root cause localization. REASON consists of Topological Causal Discovery and Individual Causal Discovery. The Topological Causal Discovery component aims to model the fault propagation in order to trace back to the root causes. To achieve this, we propose novel hierarchical graph neural networks to construct interdependent causal networks by modeling both intra-level and inter-level non-linear causal relations. Based on the learned interdependent causal networks, we then leverage random walks with restarts to model the network propagation of a system fault. The Individual Causal Discovery component focuses on capturing abrupt change patterns of a single system entity. This component examines the temporal patterns of each entity's metric data (i.e., time series), and estimates its likelihood of being a root cause based on the Extreme Value theory. Combining the topological and individual causal scores, the top K system entities are identified as root causes. Extensive experiments on three real-world datasets with case studies demonstrate the effectiveness and superiority of the proposed framework.
Key facts. Cited by 18 papers in the map (data through 7 Oct 2026). Builds on 9 of its 48 references that are in the map. First posted on arXiv 3 Feb 2023.
Builds on
9 of 48 references.
References · 9
- 2018DAGs with NO TEARS: Continuous Optimization for Structure Learningcited by 745
- 2021Graph Neural Network-Based Anomaly Detection in Multivariate Time Seriescited by 300
- 2020DYNOTEARS: Structure Learning from Time-Series Datacited by 198
- 2020On the Role of Sparsity and DAG Constraints for Learning Linear DAGscited by 186
- 2020Discovering contemporaneous and lagged causal relations in autocorrelated nonlinear time series datasetscited by 136
- 2021Anomaly Detection and Failure Root Cause Analysis in (Micro)Service-Based Cloud Applications: A Surveycited by 47
- 2021Neural graphical modelling in continuous-time: consistency guarantees and algorithmscited by 42
- 2021MicroHECL: High-Efficient Root Cause Localization in Large-Scale Microservice Systemscited by 36
- 2017Survey on Models and Techniques for Root-Cause Analysiscited by 15
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Citing papers per year: 2023: 4; 2024: 6; 2025: 3; 2026: 5.
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- 2024Root Cause Analysis In Microservice Using Neural Granger Causal Discoverycited by 31
- 2024Root Cause Analysis of Outliers with Missing Structural Knowledgecited by 19
- 2024A Comprehensive Survey on Root Cause Analysis in (Micro) Services: Methodologies, Challenges, and Trendscited by 10
- 2023Exploring Causal Learning through Graph Neural Networks: An In-depth Reviewcited by 8
- 2024Multi-modal Causal Structure Learning and Root Cause Analysiscited by 6
- 2025Incremental Causal Graph Learning for Online Cyberattack Detection in Cyber-Physical Infrastructurescited by 4
- 2023Emergence and Causality in Complex Systems: A Survey on Causal Emergence and Related Quantitative Studiescited by 3
- 2024CHASE: A Causal Hypergraph based Framework for Root Cause Analysis in Multimodal Microservice Systemscited by 2
- 2023Deep Graph Stream SVDD: Anomaly Detection in Cyber-Physical Systemscited by 1
- 2025Causal Graph Neural Networks for Healthcarecited by 1
- 2023Disentangled Causal Graph Learning for Online Unsupervised Root Cause Analysiscited by 0
- 2024RIO-CPD: A Riemannian Geometric Method for Correlation-aware Online Change Point Detectioncited by 0
6 more
- 2025LOOP: A Plug-and-Play Neuro-Symbolic Framework for Enhancing Planning in Autonomous Systemscited by 0
- 2026Agentic Diagnostic Reasoning over Telecom and Datacenter Infrastructurecited by 0
- 2026Causal explanations of outliers in systems with lagged time-dependenciescited by 0
- 2026MARLIN: Multi-Agent Reinforcement Learning for Incremental DAG Discoverycited by 0
- 2026Where Root Cause Analysis Fails: A Retrieval-Reranking Decompositioncited by 0
- 2026Beyond Conditional Independence: Root Cause Analysis with Deep Causal Modelscited by 0
- 2026Beyond Conditional Independence: Root Cause Analysis with Deep Causal Models29 Sep 2026
- 2026Where Root Cause Analysis Fails: A Retrieval-Reranking Decomposition29 Sep 2026
- 2026MARLIN: Multi-Agent Reinforcement Learning for Incremental DAG Discovery19 Mar 2026
- 2026Causal explanations of outliers in systems with lagged time-dependencies4 Feb 2026
- 2026Agentic Diagnostic Reasoning over Telecom and Datacenter Infrastructure12 Jan 2026
- 2025Causal Graph Neural Networks for Healthcare4 Nov 2025
- 2025LOOP: A Plug-and-Play Neuro-Symbolic Framework for Enhancing Planning in Autonomous Systems18 Aug 2025
- 2025Incremental Causal Graph Learning for Online Cyberattack Detection in Cyber-Physical Infrastructures18 Jul 2025
- 2024A Comprehensive Survey on Root Cause Analysis in (Micro) Services: Methodologies, Challenges, and Trends23 Jul 2024
- 2024RIO-CPD: A Riemannian Geometric Method for Correlation-aware Online Change Point Detection12 Jul 2024
- 2024CHASE: A Causal Hypergraph based Framework for Root Cause Analysis in Multimodal Microservice Systems28 Jun 2024
- 2024Root Cause Analysis of Outliers with Missing Structural Knowledge7 Jun 2024
6 more
- 2024Multi-modal Causal Structure Learning and Root Cause Analysis4 Feb 2024
- 2024Root Cause Analysis In Microservice Using Neural Granger Causal Discovery2 Feb 2024
- 2023Emergence and Causality in Complex Systems: A Survey on Causal Emergence and Related Quantitative Studies28 Dec 2023
- 2023Exploring Causal Learning through Graph Neural Networks: An In-depth Review25 Nov 2023
- 2023Disentangled Causal Graph Learning for Online Unsupervised Root Cause Analysis18 May 2023
- 2023Deep Graph Stream SVDD: Anomaly Detection in Cyber-Physical Systems24 Feb 2023
- 2024Root Cause Analysis In Microservice Using Neural Granger Causal Discoverycited by 31
- 2024Root Cause Analysis of Outliers with Missing Structural Knowledgecited by 19
- 2024A Comprehensive Survey on Root Cause Analysis in (Micro) Services: Methodologies, Challenges, and Trendscited by 10
- 2023Exploring Causal Learning through Graph Neural Networks: An In-depth Reviewcited by 8
- 2024Multi-modal Causal Structure Learning and Root Cause Analysiscited by 6
- 2025Incremental Causal Graph Learning for Online Cyberattack Detection in Cyber-Physical Infrastructurescited by 4
- 2023Emergence and Causality in Complex Systems: A Survey on Causal Emergence and Related Quantitative Studiescited by 3
- 2024CHASE: A Causal Hypergraph based Framework for Root Cause Analysis in Multimodal Microservice Systemscited by 2
- 2023Deep Graph Stream SVDD: Anomaly Detection in Cyber-Physical Systemscited by 1
- 2025Causal Graph Neural Networks for Healthcarecited by 1
- 2023Disentangled Causal Graph Learning for Online Unsupervised Root Cause Analysiscited by 0
- 2024RIO-CPD: A Riemannian Geometric Method for Correlation-aware Online Change Point Detectioncited by 0
12 most cited of 17 All 17 (JSON)
- 2026Beyond Conditional Independence: Root Cause Analysis with Deep Causal Models29 Sep 2026
- 2026Where Root Cause Analysis Fails: A Retrieval-Reranking Decomposition29 Sep 2026
- 2026MARLIN: Multi-Agent Reinforcement Learning for Incremental DAG Discovery19 Mar 2026
- 2026Causal explanations of outliers in systems with lagged time-dependencies4 Feb 2026
- 2025Causal Graph Neural Networks for Healthcare4 Nov 2025
- 2025LOOP: A Plug-and-Play Neuro-Symbolic Framework for Enhancing Planning in Autonomous Systems18 Aug 2025
- 2025Incremental Causal Graph Learning for Online Cyberattack Detection in Cyber-Physical Infrastructures18 Jul 2025
- 2024A Comprehensive Survey on Root Cause Analysis in (Micro) Services: Methodologies, Challenges, and Trends23 Jul 2024
- 2024RIO-CPD: A Riemannian Geometric Method for Correlation-aware Online Change Point Detection12 Jul 2024
- 2024CHASE: A Causal Hypergraph based Framework for Root Cause Analysis in Multimodal Microservice Systems28 Jun 2024
- 2024Root Cause Analysis of Outliers with Missing Structural Knowledge7 Jun 2024
- 2024Multi-modal Causal Structure Learning and Root Cause Analysis4 Feb 2024
12 newest of 17 All 17 (JSON)