Bayesian model calibration for block copolymer self-assembly: Likelihood-free inference and expected information gain computation via measure transport
Not on the map. Why?
Abstract (arXiv)
We consider the Bayesian calibration of models describing the phenomenon of block copolymer (BCP) self-assembly using image data produced by microscopy or X-ray scattering techniques. To account for the random long-range disorder in BCP equilibrium structures, we introduce auxiliary variables to represent this aleatory uncertainty. These variables, however, result in an integrated likelihood for high-dimensional image data that is generally intractable to evaluate. We tackle this challenging Bayesian inference problem using a likelihood-free approach based on measure transport together with the construction of summary statistics for the image data. We also show that expected information gains (EIGs) from the observed data about the model parameters can be computed with no significant additional cost. Lastly, we present a numerical case study based on the Ohta--Kawasaki model for diblock copolymer thin film self-assembly and top-down microscopy characterization. For calibration, we introduce several domain-specific energy- and Fourier-based summary statistics, and quantify their informativeness using EIG. We demonstrate the power of the proposed approach to study the effect of data corruptions and experimental designs on the calibration results.
Key facts. Cited by 11 papers in the map (data through 7 Oct 2026). Builds on 20 of its 131 references that are in the map. First posted on arXiv 22 Jun 2022.
Builds on
20 of 131 references.
References · 20
- 2019On Variational Bounds of Mutual Informationcited by 550
- 2019The frontier of simulation-based inferencecited by 490
- 2018Sequential Neural Likelihood: Fast Likelihood-free Inference with Autoregressive Flowscited by 217
- 2019Automatic Posterior Transformation for Likelihood-Free Inferencecited by 216
- 2019Variational Bayesian Optimal Experimental Designcited by 116
- 2017On Nesting Monte Carlo Estimatorscited by 82
- 2016Likelihood-free inference by ratio estimationcited by 80
- 2016Fast ε-free Inference of Simulation Models with Bayesian Conditional Density Estimationcited by 50
- 2017Inference via low-dimensional couplingscited by 43
- 2013A computational framework for infinite-dimensional Bayesian inverse problems. Part I: The linearized case, with application to global seismic inversioncited by 32
- 2020A fast and scalable computational framework for large-scale and high-dimensional Bayesian optimal experimental designcited by 9
- 2019A layered multiple importance sampling scheme for focused optimal Bayesian experimental designcited by 8
8 more
- 2019hIPPYlib: An Extensible Software Framework for Large-Scale Inverse Problems Governed by PDEs; Part I: Deterministic Inversion and Linearized Bayesian Inferencecited by 8
- 2016Pseudo-Marginal Hamiltonian Monte Carlocited by 6
- 2016Mitigating the Influence of the Boundary on PDE-based Covariance Operatorscited by 4
- 2018High-dimensional ABCcited by 2
- 2020A globally convergent modified Newton method for the direct minimization of the Ohta-Kawasaki energy with application to the directed self-assembly of diblock copolymerscited by 2
- 2015A hierarchical Bayesian setting for an inverse problem in linear parabolic PDEs with noisy boundary conditionscited by 1
- 2015On Consistency of Approximate Bayesian Computationcited by 1
- 2018Bayesian Deconvolution of Scanning Electron Microscopy Images Using Point-spread Function Estimation and Non-local Regularizationcited by 1
Built on by
Citing papers per year: 2022: 1; 2023: 1; 2024: 5; 2025: 1; 2026: 3.
11 papers.
- 2022On minimax density estimation via measure transportcited by 18
- 2024Score-based generative models are provably robust: an uncertainty quantification perspectivecited by 14
- 2024LazyDINO: Fast, scalable, and efficiently amortized Bayesian inversion via structure-exploiting and surrogate-driven measure transportcited by 7
- 2024Expected information gain estimation via density approximations: Sample allocation and dimension reductioncited by 4
- 2025A friendly introduction to triangular transportcited by 4
- 2024Nonlinear denoising score matching for enhanced learning of structured distributionscited by 3
- 2023A transport approach to sequential simulation-based inferencecited by 2
- 2024Coupled Input-Output Dimension Reduction: Application to Goal-oriented Bayesian Experimental Design and Global Sensitivity Analysiscited by 1
- 2026Optimal Experimental Design for Reliable Learning of History-Dependent Constitutive Lawscited by 1
- 2026Learning the Structure of Triangular Transport Mapscited by 0
- 2026Multifidelity Formulations for Triangular Transportcited by 0
- 2026Multifidelity Formulations for Triangular Transport30 Sep 2026
- 2026Learning the Structure of Triangular Transport Maps29 Sep 2026
- 2026Optimal Experimental Design for Reliable Learning of History-Dependent Constitutive Laws12 Mar 2026
- 2025A friendly introduction to triangular transport27 Mar 2025
- 2024LazyDINO: Fast, scalable, and efficiently amortized Bayesian inversion via structure-exploiting and surrogate-driven measure transport19 Nov 2024
- 2024Expected information gain estimation via density approximations: Sample allocation and dimension reduction13 Nov 2024
- 2024Coupled Input-Output Dimension Reduction: Application to Goal-oriented Bayesian Experimental Design and Global Sensitivity Analysis19 Jun 2024
- 2024Score-based generative models are provably robust: an uncertainty quantification perspective24 May 2024
- 2024Nonlinear denoising score matching for enhanced learning of structured distributions24 May 2024
- 2023A transport approach to sequential simulation-based inference26 Aug 2023
- 2022On minimax density estimation via measure transport20 Jul 2022