mlsanityData to 14 Oct 2026

Fine-Tuning Graph Neural Networks via Graph Topology induced Optimal Transport

arXiv 2203.10453 ↗First posted 20 Mar 2022cs.LGcited by 19

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Abstract (arXiv)

Recently, the pretrain-finetuning paradigm has attracted tons of attention in graph learning community due to its power of alleviating the lack of labels problem in many real-world applications. Current studies use existing techniques, such as weight constraint, representation constraint, which are derived from images or text data, to transfer the invariant knowledge from the pre-train stage to fine-tuning stage. However, these methods failed to preserve invariances from graph structure and Graph Neural Network (GNN) style models. In this paper, we present a novel optimal transport-based fine-tuning framework called GTOT-Tuning, namely, Graph Topology induced Optimal Transport fine-Tuning, for GNN style backbones. GTOT-Tuning is required to utilize the property of graph data to enhance the preservation of representation produced by fine-tuned networks. Toward this goal, we formulate graph local knowledge transfer as an Optimal Transport (OT) problem with a structural prior and construct the GTOT regularizer to constrain the fine-tuned model behaviors. By using the adjacency relationship amongst nodes, the GTOT regularizer achieves node-level optimal transport procedures and reduces redundant transport procedures, resulting in efficient knowledge transfer from the pre-trained models. We evaluate GTOT-Tuning on eight downstream tasks with various GNN backbones and demonstrate that it achieves state-of-the-art fine-tuning performance for GNNs.

Key facts. Cited by 19 papers in the map (data through 14 Oct 2026). Builds on 23 of its 46 references that are in the map. First posted on arXiv 20 Mar 2022.

Builds on

23 of 46 references.

References · 23

  1. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
  2. 2018How Powerful are Graph Neural Networks?cited by 4,393
  3. 2014How transferable are features in deep neural networks?cited by 1,225
  4. 2020Graph Contrastive Learning with Augmentationscited by 1,208
  5. 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,102
  6. 2017MoleculeNet: A Benchmark for Molecular Machine Learningcited by 1,051
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11 more
  1. 2017Near-linear time approximation algorithms for optimal transport via Sinkhorn iterationcited by 223
  2. 2019Gromov-Wasserstein Learning for Graph Matching and Node Embeddingcited by 126
  3. 2021Self-supervised Graph-level Representation Learning with Local and Global Structurecited by 125
  4. 2020Graph Optimal Transport for Cross-Domain Alignmentcited by 103
  5. 2021Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Dockingcited by 82
  6. 2019DELTA: DEep Learning Transfer using Feature Map with Attention for Convolutional Networkscited by 80
  7. 2020Wasserstein Contrastive Representation Distillationcited by 64
  8. 2019Improving Sequence-to-Sequence Learning via Optimal Transportcited by 33
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Citing papers per year: 2022: 3; 2023: 4; 2024: 8; 2025: 3; 2026: 1.

19 papers.

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  1. 2024GraphLoRA: Structure-Aware Contrastive Low-Rank Adaptation for Cross-Graph Transfer Learningcited by 21
  2. 2022Preventing Over-Smoothing for Hypergraph Neural Networkscited by 20
  3. 2023When to Pre-Train Graph Neural Networks? From Data Generation Perspective!cited by 18
  4. 2024A Survey of Deep Graph Learning under Distribution Shifts: from Graph Out-of-Distribution Generalization to Adaptationcited by 17
  5. 2022Hypergraph Convolutional Networks via Equivalency between Hypergraphs and Undirected Graphscited by 16
  6. 2023Search to Fine-tune Pre-trained Graph Neural Networks for Graph-level Taskscited by 13
  7. 2023Fine-tuning Graph Neural Networks by Preserving Graph Generative Patternscited by 13
  8. 2025GRAVER: Generative Graph Vocabularies for Robust Graph Foundation Models Fine-tuningcited by 13
  9. 2024A Survey on Self-Supervised Graph Foundation Models: Knowledge-Based Perspectivecited by 9
  10. 2024Beyond Generalization: A Survey of Out-Of-Distribution Adaptation on Graphscited by 7
  11. 2024SubGDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learningcited by 4
  12. 2022A Simple Hypergraph Kernel Convolution based on Discounted Markov Diffusion Processcited by 2
7 more
  1. 2023Keypoint-Guided Optimal Transport: Models, Algorithms, and Applicationscited by 1
  2. 2024Enhancing Molecular Property Prediction with Auxiliary Learning and Task-Specific Adaptationcited by 1
  3. 2024GraphMU: Repairing Robustness of Graph Neural Networks via Machine Unlearningcited by 1
  4. 2025Graph Augmentation for Cross Graph Domain Generalizationcited by 1
  5. 2024Graph Residual based Method for Molecular Property Predictioncited by 0
  6. 2025Bridging the Gap Between Simulated and Real Network Data Using Transfer Learningcited by 0
  7. 2026Locality-aware Private Class Identification for Domain Adaptation with Extreme Label Shiftcited by 0