Precision-medicine-toolbox: An open-source python package for facilitation of quantitative medical imaging and radiomics analysis
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Abstract (arXiv)
Medical image analysis plays a key role in precision medicine as it allows the clinicians to identify anatomical abnormalities and it is routinely used in clinical assessment. Data curation and pre-processing of medical images are critical steps in the quantitative medical image analysis that can have a significant impact on the resulting model performance. In this paper, we introduce a precision-medicine-toolbox that allows researchers to perform data curation, image pre-processing and handcrafted radiomics extraction (via Pyradiomics) and feature exploration tasks with Python. With this open-source solution, we aim to address the data preparation and exploration problem, bridge the gap between the currently existing packages, and improve the reproducibility of quantitative medical imaging research.
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References · 7
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- 2020pymia: A Python package for data handling and evaluation in deep learning-based medical image analysiscited by 16
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