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CSI: Contrastive Data Stratification for Interaction Prediction and its Application to Compound-Protein Interaction Prediction

arXiv 2111.09467 ↗First posted 18 Nov 2021cs.LG q-bio.MN q-bio.QMcited by 0

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Abstract (arXiv)

Accurately predicting the likelihood of interaction between two objects (compound-protein sequence, user-item, author-paper, etc.) is a fundamental problem in Computer Science. Current deep-learning models rely on learning accurate representations of the interacting objects. Importantly, relationships between the interacting objects, or features of the interaction, offer an opportunity to partition the data to create multi-views of the interacting objects. The resulting congruent and non-congruent views can then be exploited via contrastive learning techniques to learn enhanced representations of the objects.

Key facts. No citing papers in the map yet (data through 7 Oct 2026). Builds on 15 of its 38 references that are in the map. First posted on arXiv 18 Nov 2021.

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References · 15

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3 more
  1. 2019Pre-Training of Deep Bidirectional Protein Sequence Representations with Structural Informationcited by 15
  2. 2020DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Predictioncited by 13
  3. 2018PADME: A Deep Learning-based Framework for Drug-Target Interaction Predictioncited by 8

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