Scalable deeper graph neural networks for high-performance materials property prediction
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Abstract (arXiv)
Machine learning (ML) based materials discovery has emerged as one of the most promising approaches for breakthroughs in materials science. While heuristic knowledge based descriptors have been combined with ML algorithms to achieve good performance, the complexity of the physicochemical mechanisms makes it urgently needed to exploit representation learning from either compositions or structures for building highly effective materials machine learning models. Among these methods, the graph neural networks have shown the best performance by its capability to learn high-level features from crystal structures. However, all these models suffer from their inability to scale up the models due to the over-smoothing issue of their message-passing GNN architecture. Here we propose a novel graph attention neural network model DeeperGATGNN with differentiable group normalization and skip-connections, which allows to train very deep graph neural network models (e.g. 30 layers compared to 3-9 layers in previous works). Through systematic benchmark studies over six benchmark datasets for energy and band gap predictions, we show that our scalable DeeperGATGNN model needs little costly hyper-parameter tuning for different datasets and achieves the state-of-the-art prediction performances over five properties out of six with up to 10% improvement. Our work shows that to deal with the high complexity of mapping the crystal materials structures to their properties, large-scale very deep graph neural networks are needed to achieve robust performances.
Key facts. Cited by 26 papers in the map (data through 14 Oct 2026). Builds on 37 of its 76 references that are in the map. First posted on arXiv 25 Sep 2021.
Builds on
37 of 76 references.
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Citing papers per year: 2021: 1; 2022: 6; 2023: 5; 2024: 4; 2025: 8; 2026: 2.
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- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Predictioncited by 37
- 2024LLM4Mat-Bench: Benchmarking Large Language Models for Materials Property Predictioncited by 21
- 2024Structure-based out-of-distribution (OOD) materials property prediction: a benchmark studycited by 17
- 2022Materials Property Prediction with Uncertainty Quantification: A Benchmark Studycited by 15
- 2025DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and moleculescited by 13
- 2022Crystal Transformer: Self-learning neural language model for Generative and Tinkering Design of Materialscited by 8
- 2022Formula graph self-attention network for representation-domain independent materials discoverycited by 7
- 2025The Vendiscope: An Algorithmic Microscope For Data Collectionscited by 5
- 2023Crystal structure prediction using neural network potential and age-fitness Pareto genetic algorithmcited by 4
- 2022Material Property Prediction using Graphs based on Generically Complete Isometry Invariantscited by 2
- 2025Polymorphism Crystal Structure Prediction with Adaptive Space Group Diversity Controlcited by 2
- 2021Semi-supervised teacher-student deep neural network for materials discoverycited by 1
14 more
- 2022Materials Transformers Language Models for Generative Materials Design: a benchmark studycited by 1
- 2022Artificial Intelligence in Material Engineering: A review on applications of AI in Material Engineeringcited by 1
- 2023Topological, or Non-topological? A Deep Learning Based Predictioncited by 1
- 2025Discovery of sustainable energy materials via the machine-learned material spacecited by 1
- 2025Benchmarking GNNs for OOD Materials Property Prediction with Uncertainty Quantificationcited by 1
- 2023Substitutional Alloying Using Crystal Graph Neural Networkscited by 0
- 2023MD-HIT: Machine learning for materials property prediction with dataset redundancy controlcited by 0
- 2024Accelerating Material Property Prediction using Generically Complete Isometry Invariantscited by 0
- 2024AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learningcited by 0
- 2025A Materials Map Integrating Experimental and Computational Data via Graph-Based Machine Learning for Enhanced Materials Discoverycited by 0
- 2025Facet: highly efficient E(3)-equivariant networks for interatomic potentialscited by 0
- 2025Element2Vec: Build Chemical Element Representation from Text for Property Predictioncited by 0
- 2026Optimizing Expert-Designed Crystal Graph Networks for Band-Gap Prediction with an Autonomous LLM Research Loopcited by 0
- 2026AutoMatBench: An Automatic Optimization Toolkit for the Acceleration of Material Properties Prediction Benchmarkingcited by 0
- 2026AutoMatBench: An Automatic Optimization Toolkit for the Acceleration of Material Properties Prediction Benchmarking13 Jul 2026
- 2026Optimizing Expert-Designed Crystal Graph Networks for Band-Gap Prediction with an Autonomous LLM Research Loop29 Jun 2026
- 2025Benchmarking GNNs for OOD Materials Property Prediction with Uncertainty Quantification12 Nov 2025
- 2025Element2Vec: Build Chemical Element Representation from Text for Property Prediction15 Oct 2025
- 2025Facet: highly efficient E(3)-equivariant networks for interatomic potentials10 Sep 2025
- 2025Polymorphism Crystal Structure Prediction with Adaptive Space Group Diversity Control12 Jun 2025
- 2025A Materials Map Integrating Experimental and Computational Data via Graph-Based Machine Learning for Enhanced Materials Discovery10 Mar 2025
- 2025The Vendiscope: An Algorithmic Microscope For Data Collections15 Feb 2025
- 2025Discovery of sustainable energy materials via the machine-learned material space10 Jan 2025
- 2025DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and molecules5 Jan 2025
- 2024LLM4Mat-Bench: Benchmarking Large Language Models for Materials Property Prediction31 Oct 2024
- 2024AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learning7 Apr 2024
14 more
- 2024Accelerating Material Property Prediction using Generically Complete Isometry Invariants22 Jan 2024
- 2024Structure-based out-of-distribution (OOD) materials property prediction: a benchmark study16 Jan 2024
- 2023Topological, or Non-topological? A Deep Learning Based Prediction29 Oct 2023
- 2023Crystal structure prediction using neural network potential and age-fitness Pareto genetic algorithm13 Sep 2023
- 2023MD-HIT: Machine learning for materials property prediction with dataset redundancy control10 Jul 2023
- 2023Substitutional Alloying Using Crystal Graph Neural Networks19 Jun 2023
- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Prediction12 Jun 2023
- 2022Material Property Prediction using Graphs based on Generically Complete Isometry Invariants19 Dec 2022
- 2022Materials Property Prediction with Uncertainty Quantification: A Benchmark Study4 Nov 2022
- 2022Artificial Intelligence in Material Engineering: A review on applications of AI in Material Engineering15 Sep 2022
- 2022Materials Transformers Language Models for Generative Materials Design: a benchmark study27 Jun 2022
- 2022Crystal Transformer: Self-learning neural language model for Generative and Tinkering Design of Materials25 Apr 2022
- 2022Formula graph self-attention network for representation-domain independent materials discovery14 Jan 2022
- 2021Semi-supervised teacher-student deep neural network for materials discovery12 Dec 2021
- 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Predictioncited by 37
- 2024LLM4Mat-Bench: Benchmarking Large Language Models for Materials Property Predictioncited by 21
- 2024Structure-based out-of-distribution (OOD) materials property prediction: a benchmark studycited by 17
- 2022Materials Property Prediction with Uncertainty Quantification: A Benchmark Studycited by 15
- 2025DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and moleculescited by 13
- 2022Crystal Transformer: Self-learning neural language model for Generative and Tinkering Design of Materialscited by 8
- 2022Formula graph self-attention network for representation-domain independent materials discoverycited by 7
- 2025The Vendiscope: An Algorithmic Microscope For Data Collectionscited by 5
- 2023Crystal structure prediction using neural network potential and age-fitness Pareto genetic algorithmcited by 4
- 2022Material Property Prediction using Graphs based on Generically Complete Isometry Invariantscited by 2
- 2025Polymorphism Crystal Structure Prediction with Adaptive Space Group Diversity Controlcited by 2
- 2022Materials Transformers Language Models for Generative Materials Design: a benchmark studycited by 1
12 most cited of 25 All 25 (JSON)
- 2026AutoMatBench: An Automatic Optimization Toolkit for the Acceleration of Material Properties Prediction Benchmarking13 Jul 2026
- 2026Optimizing Expert-Designed Crystal Graph Networks for Band-Gap Prediction with an Autonomous LLM Research Loop29 Jun 2026
- 2025Benchmarking GNNs for OOD Materials Property Prediction with Uncertainty Quantification12 Nov 2025
- 2025Element2Vec: Build Chemical Element Representation from Text for Property Prediction15 Oct 2025
- 2025Facet: highly efficient E(3)-equivariant networks for interatomic potentials10 Sep 2025
- 2025Polymorphism Crystal Structure Prediction with Adaptive Space Group Diversity Control12 Jun 2025
- 2025A Materials Map Integrating Experimental and Computational Data via Graph-Based Machine Learning for Enhanced Materials Discovery10 Mar 2025
- 2025The Vendiscope: An Algorithmic Microscope For Data Collections15 Feb 2025
- 2025Discovery of sustainable energy materials via the machine-learned material space10 Jan 2025
- 2025DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and molecules5 Jan 2025
- 2024LLM4Mat-Bench: Benchmarking Large Language Models for Materials Property Prediction31 Oct 2024
- 2024AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learning7 Apr 2024
12 newest of 25 All 25 (JSON)