mlsanityData to 14 Oct 2026

Scalable deeper graph neural networks for high-performance materials property prediction

arXiv 2109.12283 ↗First posted 25 Sep 2021cond-mat.mtrl-sci cs.LGcited by 26

Not on the map. Why?

Abstract (arXiv)

Machine learning (ML) based materials discovery has emerged as one of the most promising approaches for breakthroughs in materials science. While heuristic knowledge based descriptors have been combined with ML algorithms to achieve good performance, the complexity of the physicochemical mechanisms makes it urgently needed to exploit representation learning from either compositions or structures for building highly effective materials machine learning models. Among these methods, the graph neural networks have shown the best performance by its capability to learn high-level features from crystal structures. However, all these models suffer from their inability to scale up the models due to the over-smoothing issue of their message-passing GNN architecture. Here we propose a novel graph attention neural network model DeeperGATGNN with differentiable group normalization and skip-connections, which allows to train very deep graph neural network models (e.g. 30 layers compared to 3-9 layers in previous works). Through systematic benchmark studies over six benchmark datasets for energy and band gap predictions, we show that our scalable DeeperGATGNN model needs little costly hyper-parameter tuning for different datasets and achieves the state-of-the-art prediction performances over five properties out of six with up to 10% improvement. Our work shows that to deal with the high complexity of mapping the crystal materials structures to their properties, large-scale very deep graph neural networks are needed to achieve robust performances.

Key facts. Cited by 26 papers in the map (data through 14 Oct 2026). Builds on 37 of its 76 references that are in the map. First posted on arXiv 25 Sep 2021.

Builds on

37 of 76 references.

References · 37

  1. 2015Deep Residual Learning for Image Recognitioncited by 52,096
  2. 2020Language Models are Few-Shot Learnerscited by 32,419
  3. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
  4. 2017Graph Attention Networkscited by 8,923
  5. 2015Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shiftcited by 7,005
  6. 2016Densely Connected Convolutional Networkscited by 6,720
  7. 2017Neural Message Passing for Quantum Chemistrycited by 3,487
  8. 2019A Comprehensive Survey on Graph Neural Networkscited by 2,919
  9. 2018Graph Neural Networks: A Review of Methods and Applicationscited by 1,576
  10. 2016Inception-v4, Inception-ResNet and the Impact of Residual Connections on Learningcited by 1,512
  11. 2016On Large-Batch Training for Deep Learning: Generalization Gap and Sharp Minimacited by 1,352
  12. 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,102
25 more
  1. 2016Deep Networks with Stochastic Depthcited by 979
  2. 2020Learning to Simulate Complex Physics with Graph Networkscited by 880
  3. 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 877
  4. 2020Simple and Deep Graph Convolutional Networkscited by 860
  5. 2019Heterogeneous Graph Attention Networkcited by 734
  6. 2019DropEdge: Towards Deep Graph Convolutional Networks on Node Classificationcited by 680
  7. 2019Measuring and Relieving the Over-smoothing Problem for Graph Neural Networks from the Topological Viewcited by 545
  8. 2019DeepGCNs: Can GCNs Go as Deep as CNNs?cited by 527
  9. 2019PairNorm: Tackling Oversmoothing in GNNscited by 297
  10. 2020DeeperGCN: All You Need to Train Deeper GCNscited by 250
  11. 2020A Note on Over-Smoothing for Graph Neural Networkscited by 249
  12. 2021Training Graph Neural Networks with 1000 Layerscited by 169
  13. 2018GaAN: Gated Attention Networks for Learning on Large and Spatiotemporal Graphscited by 165
  14. 2020Towards Deeper Graph Neural Networks with Differentiable Group Normalizationcited by 114
  15. 2018Syntax-Directed Variational Autoencoder for Structured Datacited by 103
  16. 2019DeepGCNs: Making GCNs Go as Deep as CNNscited by 72
  17. 2018GeniePath: Graph Neural Networks with Adaptive Receptive Pathscited by 66
  18. 2019Break the Ceiling: Stronger Multi-scale Deep Graph Convolutional Networkscited by 62
  19. 2019Predicting materials properties without crystal structure: Deep representation learning from stoichiometrycited by 62
  20. 2021Optimization of Graph Neural Networks: Implicit Acceleration by Skip Connections and More Depthcited by 55
  21. 2019Generative adversarial networks (GAN) based efficient sampling of chemical space for inverse design of inorganic materialscited by 46
  22. 2018CrystalGAN: Learning to Discover Crystallographic Structures with Generative Adversarial Networkscited by 31
  23. 2020Predicting Elastic Properties of Materials from Electronic Charge Density Using 3D Deep Convolutional Neural Networkscited by 7
  24. 2021Residual Network and Embedding Usage: New Tricks of Node Classification with Graph Convolutional Networkscited by 3
  25. 2021NODE-SELECT: A Graph Neural Network Based On A Selective Propagation Techniquecited by 2

Built on by

Cited by year (2026 to 14 Oct)

Citing papers per year: 2021: 1; 2022: 6; 2023: 5; 2024: 4; 2025: 8; 2026: 2.

26 papers.

Sort:

By area:

  1. 2023Efficient Approximations of Complete Interatomic Potentials for Crystal Property Predictioncited by 37
  2. 2024LLM4Mat-Bench: Benchmarking Large Language Models for Materials Property Predictioncited by 21
  3. 2024Structure-based out-of-distribution (OOD) materials property prediction: a benchmark studycited by 17
  4. 2022Materials Property Prediction with Uncertainty Quantification: A Benchmark Studycited by 15
  5. 2025DenseGNN: universal and scalable deeper graph neural networks for high-performance property prediction in crystals and moleculescited by 13
  6. 2022Crystal Transformer: Self-learning neural language model for Generative and Tinkering Design of Materialscited by 8
  7. 2022Formula graph self-attention network for representation-domain independent materials discoverycited by 7
  8. 2025The Vendiscope: An Algorithmic Microscope For Data Collectionscited by 5
  9. 2023Crystal structure prediction using neural network potential and age-fitness Pareto genetic algorithmcited by 4
  10. 2022Material Property Prediction using Graphs based on Generically Complete Isometry Invariantscited by 2
  11. 2025Polymorphism Crystal Structure Prediction with Adaptive Space Group Diversity Controlcited by 2
  12. 2021Semi-supervised teacher-student deep neural network for materials discoverycited by 1
14 more
  1. 2022Materials Transformers Language Models for Generative Materials Design: a benchmark studycited by 1
  2. 2022Artificial Intelligence in Material Engineering: A review on applications of AI in Material Engineeringcited by 1
  3. 2023Topological, or Non-topological? A Deep Learning Based Predictioncited by 1
  4. 2025Discovery of sustainable energy materials via the machine-learned material spacecited by 1
  5. 2025Benchmarking GNNs for OOD Materials Property Prediction with Uncertainty Quantificationcited by 1
  6. 2023Substitutional Alloying Using Crystal Graph Neural Networkscited by 0
  7. 2023MD-HIT: Machine learning for materials property prediction with dataset redundancy controlcited by 0
  8. 2024Accelerating Material Property Prediction using Generically Complete Isometry Invariantscited by 0
  9. 2024AlphaCrystal-II: Distance matrix based crystal structure prediction using deep learningcited by 0
  10. 2025A Materials Map Integrating Experimental and Computational Data via Graph-Based Machine Learning for Enhanced Materials Discoverycited by 0
  11. 2025Facet: highly efficient E(3)-equivariant networks for interatomic potentialscited by 0
  12. 2025Element2Vec: Build Chemical Element Representation from Text for Property Predictioncited by 0
  13. 2026Optimizing Expert-Designed Crystal Graph Networks for Band-Gap Prediction with an Autonomous LLM Research Loopcited by 0
  14. 2026AutoMatBench: An Automatic Optimization Toolkit for the Acceleration of Material Properties Prediction Benchmarkingcited by 0