Near-Optimal Multi-Perturbation Experimental Design for Causal Structure Learning
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Abstract (arXiv)
Causal structure learning is a key problem in many domains. Causal structures can be learnt by performing experiments on the system of interest. We address the largely unexplored problem of designing a batch of experiments that each simultaneously intervene on multiple variables. While potentially more informative than the commonly considered single-variable interventions, selecting such interventions is algorithmically much more challenging, due to the doubly-exponential combinatorial search space over sets of composite interventions. In this paper, we develop efficient algorithms for optimizing different objective functions quantifying the informativeness of a budget-constrained batch of experiments. By establishing novel submodularity properties of these objectives, we provide approximation guarantees for our algorithms. Our algorithms empirically perform superior to both random interventions and algorithms that only select single-variable interventions.
Key facts. Cited by 17 papers in the map (data through 14 Oct 2026). Builds on 15 of its 40 references that are in the map. First posted on arXiv 28 May 2021.
Builds on
15 of 40 references.
References · 15
- 2013Causal Inference and Causal Explanation with Background Knowledgecited by 170
- 2017Permutation-based Causal Inference Algorithms with Interventionscited by 78
- 2018Characterizing and Learning Equivalence Classes of Causal DAGs under Interventionscited by 76
- 2019Permutation-Based Causal Structure Learning with Unknown Intervention Targetscited by 69
- 2015Learning Causal Graphs with Small Interventionscited by 63
- 2019ABCD-Strategy: Budgeted Experimental Design for Targeted Causal Structure Discoverycited by 52
- 2018Stochastic Conditional Gradient Methods: From Convex Minimization to Submodular Maximizationcited by 47
- 2017Cost-Optimal Learning of Causal Graphscited by 44
- 2017Budgeted Experiment Design for Causal Structure Learningcited by 38
- 2020Active Invariant Causal Prediction: Experiment Selection through Stabilitycited by 37
- 2018Learning and Testing Causal Models with Interventionscited by 29
- 2018Experimental Design for Cost-Aware Learning of Causal Graphscited by 25
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Citing papers per year: 2022: 5; 2023: 3; 2024: 3; 2025: 5; 2026: 1.
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- 2022Interventions, Where and How? Experimental Design for Causal Models at Scalecited by 49
- 2022Causal Structure Learning: a Combinatorial Perspectivecited by 46
- 2022Active Bayesian Causal Inferencecited by 35
- 2022Active Learning for Optimal Intervention Design in Causal Modelscited by 31
- 2023Differentiable Multi-Target Causal Bayesian Experimental Designcited by 15
- 2023Finding Counterfactually Optimal Action Sequences in Continuous State Spacescited by 13
- 2024Amortized Active Causal Induction with Deep Reinforcement Learningcited by 10
- 2025When Selection Meets Intervention: Additional Complexities in Causal Discoverycited by 10
- 2022Neural Design for Genetic Perturbation Experimentscited by 6
- 2023Sequential Underspecified Instrument Selection for Cause-Effect Estimationcited by 4
- 2024Simulation-based Benchmarking for Causal Structure Learning in Gene Perturbation Experimentscited by 3
- 2025No Foundations without Foundations -- Why semi-mechanistic models are essential for regulatory biologycited by 3
5 more
- 2025Goal-Oriented Sequential Bayesian Experimental Design for Causal Learningcited by 2
- 2024Deep Submodular Peripteral Networkscited by 1
- 2025Efficient Data Selection for Training Genomic Perturbation Modelscited by 0
- 2025Theoretical Guarantees for Causal Discovery on Large Random Graphscited by 0
- 2026FOCUS: Fixed-Confidence Online Causal Learning Using Sequential Adaptive Interventionscited by 0
- 2026FOCUS: Fixed-Confidence Online Causal Learning Using Sequential Adaptive Interventions26 Sep 2026
- 2025Theoretical Guarantees for Causal Discovery on Large Random Graphs4 Nov 2025
- 2025Goal-Oriented Sequential Bayesian Experimental Design for Causal Learning10 Jul 2025
- 2025Efficient Data Selection for Training Genomic Perturbation Models18 Mar 2025
- 2025When Selection Meets Intervention: Additional Complexities in Causal Discovery10 Mar 2025
- 2025No Foundations without Foundations -- Why semi-mechanistic models are essential for regulatory biology31 Jan 2025
- 2024Simulation-based Benchmarking for Causal Structure Learning in Gene Perturbation Experiments8 Jul 2024
- 2024Amortized Active Causal Induction with Deep Reinforcement Learning26 May 2024
- 2024Deep Submodular Peripteral Networks13 Mar 2024
- 2023Finding Counterfactually Optimal Action Sequences in Continuous State Spaces6 Jun 2023
- 2023Differentiable Multi-Target Causal Bayesian Experimental Design21 Feb 2023
- 2023Sequential Underspecified Instrument Selection for Cause-Effect Estimation11 Feb 2023
5 more
- 2022Active Learning for Optimal Intervention Design in Causal Models10 Sep 2022
- 2022Neural Design for Genetic Perturbation Experiments26 Jul 2022
- 2022Active Bayesian Causal Inference4 Jun 2022
- 2022Causal Structure Learning: a Combinatorial Perspective2 Jun 2022
- 2022Interventions, Where and How? Experimental Design for Causal Models at Scale3 Mar 2022
- 2022Interventions, Where and How? Experimental Design for Causal Models at Scalecited by 49
- 2022Causal Structure Learning: a Combinatorial Perspectivecited by 46
- 2022Active Bayesian Causal Inferencecited by 35
- 2022Active Learning for Optimal Intervention Design in Causal Modelscited by 31
- 2023Differentiable Multi-Target Causal Bayesian Experimental Designcited by 15
- 2023Finding Counterfactually Optimal Action Sequences in Continuous State Spacescited by 13
- 2025When Selection Meets Intervention: Additional Complexities in Causal Discoverycited by 10
- 2022Neural Design for Genetic Perturbation Experimentscited by 6
- 2023Sequential Underspecified Instrument Selection for Cause-Effect Estimationcited by 4
- 2024Simulation-based Benchmarking for Causal Structure Learning in Gene Perturbation Experimentscited by 3
- 2025No Foundations without Foundations -- Why semi-mechanistic models are essential for regulatory biologycited by 3
- 2025Goal-Oriented Sequential Bayesian Experimental Design for Causal Learningcited by 2
12 most cited of 16 All 16 (JSON)
- 2026FOCUS: Fixed-Confidence Online Causal Learning Using Sequential Adaptive Interventions26 Sep 2026
- 2025Theoretical Guarantees for Causal Discovery on Large Random Graphs4 Nov 2025
- 2025Goal-Oriented Sequential Bayesian Experimental Design for Causal Learning10 Jul 2025
- 2025Efficient Data Selection for Training Genomic Perturbation Models18 Mar 2025
- 2025When Selection Meets Intervention: Additional Complexities in Causal Discovery10 Mar 2025
- 2025No Foundations without Foundations -- Why semi-mechanistic models are essential for regulatory biology31 Jan 2025
- 2024Simulation-based Benchmarking for Causal Structure Learning in Gene Perturbation Experiments8 Jul 2024
- 2024Deep Submodular Peripteral Networks13 Mar 2024
- 2023Finding Counterfactually Optimal Action Sequences in Continuous State Spaces6 Jun 2023
- 2023Differentiable Multi-Target Causal Bayesian Experimental Design21 Feb 2023
- 2023Sequential Underspecified Instrument Selection for Cause-Effect Estimation11 Feb 2023
- 2022Active Learning for Optimal Intervention Design in Causal Models10 Sep 2022
12 newest of 16 All 16 (JSON)