Generalized Organ Segmentation by Imitating One-shot Reasoning using Anatomical Correlation
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Abstract (arXiv)
Learning by imitation is one of the most significant abilities of human beings and plays a vital role in human's computational neural system. In medical image analysis, given several exemplars (anchors), experienced radiologist has the ability to delineate unfamiliar organs by imitating the reasoning process learned from existing types of organs. Inspired by this observation, we propose OrganNet which learns a generalized organ concept from a set of annotated organ classes and then transfer this concept to unseen classes. In this paper, we show that such process can be integrated into the one-shot segmentation task which is a very challenging but meaningful topic. We propose pyramid reasoning modules (PRMs) to model the anatomical correlation between anchor and target volumes. In practice, the proposed module first computes a correlation matrix between target and anchor computerized tomography (CT) volumes. Then, this matrix is used to transform the feature representations of both anchor volume and its segmentation mask. Finally, OrganNet learns to fuse the representations from various inputs and predicts segmentation results for target volume. Extensive experiments show that OrganNet can effectively resist the wide variations in organ morphology and produce state-of-the-art results in one-shot segmentation task. Moreover, even when compared with fully-supervised segmentation models, OrganNet is still able to produce satisfying segmentation results.
Key facts. Cited by 6 papers in the map (data through 7 Oct 2026). Builds on 17 of its 31 references that are in the map. First posted on arXiv 30 Mar 2021.
Builds on
17 of 31 references.
References · 17
- 2014Adam: A Method for Stochastic Optimizationcited by 36,960
- 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,160
- 2016SGDR: Stochastic Gradient Descent with Warm Restartscited by 4,993
- 20163D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotationcited by 1,471
- 2016Fully-Convolutional Siamese Networks for Object Trackingcited by 566
- 2019The Liver Tumor Segmentation Benchmark (LiTS)cited by 504
- 2019The KiTS19 Challenge Data: 300 Kidney Tumor Cases with Clinical Context, CT Semantic Segmentations, and Surgical Outcomescited by 168
- 2019Data augmentation using learned transformations for one-shot medical image segmentationcited by 138
- 2019'Squeeze & Excite' Guided Few-Shot Segmentation of Volumetric Imagescited by 69
- 2020Comparing to Learn: Surpassing ImageNet Pretraining on Radiographs By Comparing Image Representationscited by 69
- 2014Multi-Atlas Segmentation of Biomedical Images: A Surveycited by 56
- 2020LT-Net: Label Transfer by Learning Reversible Voxel-wise Correspondence for One-shot Medical Image Segmentationcited by 28
5 more
- 2019Unsupervised Deep Learning for Bayesian Brain MRI Segmentationcited by 20
- 2018When Semi-Supervised Learning Meets Transfer Learning: Training Strategies, Models and Datasetscited by 9
- 2020Learning to Segment Anatomical Structures Accurately from One Exemplarcited by 8
- 2017Sunrise or Sunset: Selective Comparison Learning for Subtle Attribute Recognitioncited by 4
- 2019CompareNet: Anatomical Segmentation Network with Deep Non-local Label Fusioncited by 3
Built on by
Citing papers per year: 2021: 1; 2022: 3; 2023: 2.
6 papers.
- 2021Preservational Learning Improves Self-supervised Medical Image Models by Reconstructing Diverse Contextscited by 59
- 2023PCRLv2: A Unified Visual Information Preservation Framework for Self-supervised Pre-training in Medical Image Analysiscited by 40
- 2023A Systematic Review of Few-Shot Learning in Medical Imagingcited by 28
- 2022Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registrationcited by 14
- 2022Unsupervised Tissue Segmentation via Deep Constrained Gaussian Networkcited by 6
- 2022Exemplar Learning for Medical Image Segmentationcited by 2
- 2023A Systematic Review of Few-Shot Learning in Medical Imaging20 Sep 2023
- 2023PCRLv2: A Unified Visual Information Preservation Framework for Self-supervised Pre-training in Medical Image Analysis2 Jan 2023
- 2022Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration12 Sep 2022
- 2022Unsupervised Tissue Segmentation via Deep Constrained Gaussian Network4 Aug 2022
- 2022Exemplar Learning for Medical Image Segmentation3 Apr 2022
- 2021Preservational Learning Improves Self-supervised Medical Image Models by Reconstructing Diverse Contexts9 Sep 2021