mlsanityData to 14 Oct 2026

Symmetry-adapted graph neural networks for constructing molecular dynamics force fields

arXiv 2101.02930 ↗First posted 8 Jan 2021physics.comp-ph cond-mat.dis-nn cs.LGcited by 5

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Abstract (arXiv)

Molecular dynamics is a powerful simulation tool to explore material properties. Most of the realistic material systems are too large to be simulated with first-principles molecular dynamics. Classical molecular dynamics has lower computational cost but requires accurate force fields to achieve chemical accuracy. In this work, we develop a symmetry-adapted graph neural networks framework, named molecular dynamics graph neural networks (MDGNN), to construct force fields automatically for molecular dynamics simulations for both molecules and crystals. This architecture consistently preserves the translation, rotation and permutation invariance in the simulations. We propose a new feature engineering method including higher order contributions and show that MDGNN accurately reproduces the results of both classical and first-principles molecular dynamics. We also demonstrate that force fields constructed by the model has good transferability. Therefore, MDGNN provides an efficient and promising option for molecular dynamics simulations of large scale systems with high accuracy.

Key facts. Cited by 5 papers in the map (data through 14 Oct 2026). Builds on 25 of its 73 references that are in the map. First posted on arXiv 8 Jan 2021.

Builds on

25 of 73 references.

References · 25

  1. 2015Deep Residual Learning for Image Recognitioncited by 52,096
  2. 2014Adam: A Method for Stochastic Optimizationcited by 37,240
  3. 2019PyTorch: An Imperative Style, High-Performance Deep Learning Librarycited by 20,305
  4. 2016Semi-Supervised Classification with Graph Convolutional Networkscited by 11,361
  5. 2016PointNet: Deep Learning on Point Sets for 3D Classification and Segmentationcited by 5,248
  6. 2017PointNet++: Deep Hierarchical Feature Learning on Point Sets in a Metric Spacecited by 4,401
  7. 2018How Powerful are Graph Neural Networks?cited by 4,393
  8. 2017Neural Message Passing for Quantum Chemistrycited by 3,487
  9. 2019A Comprehensive Survey on Graph Neural Networkscited by 2,919
  10. 2019Fast Graph Representation Learning with PyTorch Geometriccited by 2,434
  11. 2018Graph Neural Networks: A Review of Methods and Applicationscited by 1,576
  12. 2013Spectral Networks and Locally Connected Networks on Graphscited by 1,102
13 more
  1. 2018Deeper Insights into Graph Convolutional Networks for Semi-Supervised Learningcited by 1,102
  2. 2018Representation Learning on Graphs with Jumping Knowledge Networkscited by 877
  3. 2018Hierarchical Graph Representation Learning with Differentiable Poolingcited by 787
  4. 2017SchNet: A continuous-filter convolutional neural network for modeling quantum interactionscited by 571
  5. 2020Directional Message Passing for Molecular Graphscited by 561
  6. 2019DeepGCNs: Can GCNs Go as Deep as CNNs?cited by 527
  7. 2017Representation Learning on Graphs: Methods and Applicationscited by 457
  8. 2018Deep Learning on Graphs: A Surveycited by 393
  9. 2017Deep Potential Molecular Dynamics: a scalable model with the accuracy of quantum mechanicscited by 214
  10. 2015A Theoretically Grounded Application of Dropout in Recurrent Neural Networkscited by 161
  11. 2017Visual Interaction Networkscited by 95
  12. 2017DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamicscited by 79
  13. 2019TeaNet: universal neural network interatomic potential inspired by iterative electronic relaxationscited by 16

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Cited by year

Citing papers per year: 2021: 3; 2022: 1; 2023: 1.

5 papers.